CX300590

Overview
NameCX300590
Unique NameCX300590
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length272
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300590 vs. ExPASy Swiss-Prot
Match: PSAN_ARATH (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2)

HSP 1 Score: 56.225 bits (134), Expect = 4.281e-17
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 3
Query:   48 LPSKRKCHSISDDLELECKGKEKYKCGSNVFWKW 149
            L  ++K   IS+D+ LEC+GK+KYKCGSNVFWKW
Sbjct:  138 LAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171          

HSP 2 Score: 50.8322 bits (120), Expect = 4.281e-17
Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 2
Query:   11 CKFPENFTGCQDLAKQKKVPF 73
            CKFPENFTGCQDLAKQKKVPF
Sbjct:  126 CKFPENFTGCQDLAKQKKVPF 146          
BLAST of CX300590 vs. ExPASy Swiss-Prot
Match: PSAN_HORVU (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 5.589e-17
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 3
Query:   48 LPSKRKCHSISDDLELECKGKEKYKCGSNVFWKW 149
            L  ++K   I+DDLE+EC+GKEK+KCGSNVFWKW
Sbjct:  112 LAKQKKVPFITDDLEIECEGKEKFKCGSNVFWKW 145          

HSP 2 Score: 48.1358 bits (113), Expect = 5.589e-17
Identity = 20/21 (95.24%), Postives = 20/21 (95.24%), Query Frame = 2
Query:   11 CKFPENFTGCQDLAKQKKVPF 73
            CKFP NFTGCQDLAKQKKVPF
Sbjct:  100 CKFPYNFTGCQDLAKQKKVPF 120          
BLAST of CX300590 vs. ExPASy Swiss-Prot
Match: PSAN_MAIZE (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 7.316e-17
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 3
Query:   48 LPSKRKCHSISDDLELECKGKEKYKCGSNVFWKW 149
            L  ++K   ISDDLE+EC+GKEK+KCGSNVFWKW
Sbjct:   79 LAKQKKVPFISDDLEIECEGKEKFKCGSNVFWKW 112          

HSP 2 Score: 46.595 bits (109), Expect = 7.316e-17
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 2
Query:   11 CKFPENFTGCQDLAKQKKVPF 73
            C+FP NFTGCQDLAKQKKVPF
Sbjct:   67 CQFPYNFTGCQDLAKQKKVPF 87          
The following BLAST results are available for this feature:
BLAST of CX300590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PSAN_ARATH4.281e-1764.71Photosystem I reaction center subunit N, chloropla... [more]
PSAN_HORVU5.589e-1767.65Photosystem I reaction center subunit N, chloropla... [more]
PSAN_MAIZE7.316e-1770.59Photosystem I reaction center subunit N, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionC07012A05SK SaltLeaf1 Citrus clementina cDNA clone C07012A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300590 ID=CX300590; Name=CX300590; organism=Citrus clementina; type=EST; length=272bp
TTTGGCACAATGCAAGTTCCCTGAGAACTTCACAGGCTGCCAAGATCTTG
CCAAGCAAAAGAAAGTGCCATTCAATCTCGGATGATTTGGAATTGGAGTG
CAAAGGGAAAGAAAAATACAAGTGTGGTTCCAATGTTTTCTGGAAATGGT
GAAGTGGGACAACTGATCTCTTTAAAAATTTTATTTTACCCTCCCATGTA
TCTAAGTTTCCATTGAAGAAGCTTTACTTGTGCTAAAAAAAAAAAAAAAA
AAAACTCGAGGGGGGGCCCGGT
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