CX300604

Overview
NameCX300604
Unique NameCX300604
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length321
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig835 contig Ccv1_Contig835:93..412. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300604 vs. ExPASy Swiss-Prot
Match: AL2B7_ARATH (Aldehyde dehydrogenase family 2 member B7, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B7 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.287e-12
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 2 
Query:    2 GTVWINCYDVFDAAIPFGGYKLSGIGRE*GIYSLKRLLASKGRRSTCEEPS 154
            GTVWINC+DV DA+IPFGGYK+SGIGRE GIYSL   L  K   ++ + P+
Sbjct:  482 GTVWINCFDVLDASIPFGGYKMSGIGREKGIYSLNNYLQVKAVVTSLKNPA 532
[Close]
BLAST of CX300604 vs. ExPASy Swiss-Prot
Match: AL2B4_ARATH (Aldehyde dehydrogenase family 2 member B4, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B4 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.287e-12
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 2 
Query:    2 GTVWINCYDVFDAAIPFGGYKLSGIGRE*GIYSLKRLLASKGRRSTCEEPS 154
            GTVW+NC+DVFDAAIPFGGYK+SG GRE GIYSL   L  K   +   +P+
Sbjct:  486 GTVWVNCFDVFDAAIPFGGYKMSGNGREKGIYSLNNYLQIKAVVTALNKPA 536
The following BLAST results are available for this feature:
BLAST of CX300604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AL2B7_ARATH2.287e-1262.75Aldehyde dehydrogenase family 2 member B7, mitocho... [more]
AL2B4_ARATH2.287e-1262.75Aldehyde dehydrogenase family 2 member B4, mitocho... [more]
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Properties
Property NameValue
Genbank descriptionC07012B09SK SaltLeaf1 Citrus clementina cDNA clone C07012B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300604 ID=CX300604; Name=CX300604; organism=Citrus clementina; type=EST; length=321bp
TGGGACTGTATGGATTAACTGCTACGACGTGTTTGATGCTGCTATTCCTT
TCGGTGGGTACAAGCTGAGTGGCATAGGCCGGGAATAGGGAATTTACAGC
CTTAAACGCTTACTTGCAAGTAAAGGCCGTCGTTCAACCTGTGAAGAACC
CAGCATGGCTCTAGTTTCCTGAAGTTCCCCCTCCCTTTTAATCTGTGTTT
ATGAATAAGGACAGCGTGCAAATATCATGCTTGTAATTATGGAGCAAATG
GATAATTTACTTTAAAAGAACTTACTTTCTTTTGTGCTGTAAGCACAATG
ATGCAAAAAAAATAAAAAAAA
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