CX300606

Overview
NameCX300606
Unique NameCX300606
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length293
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig108 contig Ccv1_Contig108:1063..1354. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300606 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.689e-18
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 2
Query:   29 LFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 154
            +FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  224 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of CX300606 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.689e-18
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 2
Query:   29 LFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 154
            +FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  226 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          
BLAST of CX300606 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.689e-18
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 2
Query:   29 LFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 154
            +FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  226 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          
BLAST of CX300606 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.689e-18
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 2
Query:   29 LFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 154
            +FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  224 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of CX300606 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.689e-18
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 2
Query:   29 LFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 154
            +FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  220 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261          
BLAST of CX300606 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.689e-18
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 2
Query:   29 LFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 154
            +FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  165 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206          
BLAST of CX300606 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.689e-18
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 2
Query:   29 LFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 154
            +FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  224 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of CX300606 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.689e-18
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 2
Query:   29 LFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 154
            +FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  214 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255          
BLAST of CX300606 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.414e-18
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2
Query:   29 LFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 154
            +FGFFVQAIVTGKGPL+NL DHLADPVNNNAWAYATNFVPGK
Sbjct:  226 MFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267          

HSP 2 Score: 22.7126 bits (47), Expect = 2.414e-18
Identity = 10/13 (76.92%), Postives = 10/13 (76.92%), Query Frame = 1
Query:    1 KNGRLAMFSTVWF 39
            KNGRLAMFS   F
Sbjct:  217 KNGRLAMFSMFGF 229          
BLAST of CX300606 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.880e-18
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 2
Query:   29 LFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 154
            +FGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  233 MFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274          
The following BLAST results are available for this feature:
BLAST of CX300606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
CB29_MAIZE1.689e-1897.62Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB24_TOBAC1.689e-1897.62Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB23_NICPL1.689e-1897.62Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_TOBAC1.689e-1897.62Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB22_ORYSJ1.689e-1897.62Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_CUCSA1.689e-1897.62Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_ORYSJ1.689e-1897.62Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_CUCSA1.689e-1897.62Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB27_TOBAC2.414e-1892.86Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB2B_PINSY2.880e-1895.24Chlorophyll a-b binding protein type 2 member 1B, ... [more]

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Properties
Property NameValue
Genbank descriptionC07012B11SK SaltLeaf1 Citrus clementina cDNA clone C07012B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300606 ID=CX300606; Name=CX300606; organism=Citrus clementina; type=EST; length=293bp
AAGAATGGAAGGTTGGCTATGTTCTCCACTGTTTGGTTTCTTTGTTCAGG
CCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCT
GACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGG
AAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATA
TCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATT
ATTTATAAAATGCTTCAATTTGATCTAAAAAAAAAAAAAAAAA
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