CX300607

Overview
NameCX300607
Unique NameCX300607
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length176
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15423 contig Ccv1_Contig15423:169..344. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300607 vs. ExPASy Swiss-Prot
Match: ENPL_CATRO (Endoplasmin homolog OS=Catharanthus roseus GN=HSP90 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.183e-16
Identity = 42/56 (75.00%), Postives = 49/56 (87.50%), Query Frame = 2 
Query:    8 QGRNIQAKAEDESDKLVDPPKVEEKLGAVPNGLSTDSDVAKREAESISKRSLRNNA 175
            QGR I A AE +SD  VDPPKVE+K+GAVPNGLSTDSDVAKREAES+S R+LR++A
Sbjct:   22 QGRKIHANAEADSDAPVDPPKVEDKIGAVPNGLSTDSDVAKREAESMSMRNLRSDA 77
[Close]
BLAST of CX300607 vs. ExPASy Swiss-Prot
Match: ENPL_HORVU (Endoplasmin homolog OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.467e-14
Identity = 36/58 (62.07%), Postives = 49/58 (84.48%), Query Frame = 2 
Query:    2 PDQGRNIQAKAEDESDKLVDPPKVEEKLGAVPNGLSTDSDVAKREAESISKRSLRNNA 175
            PD  + +Q  AE+ SD++ D PKVEEKLGAVP+GLSTDS+V +RE+ESIS+++LRN+A
Sbjct:   20 PDPAKKLQVNAEESSDEVGDFPKVEEKLGAVPHGLSTDSEVVQRESESISRKTLRNSA 77
[Close]
BLAST of CX300607 vs. ExPASy Swiss-Prot
Match: ENPL_ARATH (Endoplasmin homolog OS=Arabidopsis thaliana GN=SHD PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.177e-14
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 2 
Query:    2 PDQGRNIQAKAEDESDKLVDPPKVEEKLGAVPNGLSTDSDVAKREAESISKRSLRNNA 175
            PDQGR + A AE+ SD + DPPKVEEK+G    GLSTDSDV  RE+ES+SK++LR+NA
Sbjct:   20 PDQGRKLHANAEESSDDVTDPPKVEEKIGG-HGGLSTDSDVVHRESESMSKKTLRSNA 76
The following BLAST results are available for this feature:
BLAST of CX300607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ENPL_CATRO1.183e-1675.00Endoplasmin homolog OS=Catharanthus roseus GN=HSP9... [more]
ENPL_HORVU2.467e-1462.07Endoplasmin homolog OS=Hordeum vulgare PE=2 SV=1[more]
ENPL_ARATH7.177e-1463.79Endoplasmin homolog OS=Arabidopsis thaliana GN=SHD... [more]
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Properties
Property NameValue
Genbank descriptionC07012B12SK SaltLeaf1 Citrus clementina cDNA clone C07012B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300607 ID=CX300607; Name=CX300607; organism=Citrus clementina; type=EST; length=176bp
TCCAGATCAAGGCCGAAATATACAGGCAAAAGCAGAGGATGAATCTGACA
AACTAGTGGATCCTCCTAAGGTCGAGGAGAAACTCGGAGCCGTACCAAAT
GGTTTGTCGACAGATTCTGACGTGGCAAAGAGGGAAGCGGAGTCGATCTC
GAAGAGGTCACTTCGTAATAATGCGG
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