CX300611

Overview
NameCX300611
Unique NameCX300611
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig614 contig Ccv1_Contig614:86..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 3.519e-67
Identity = 68/89 (76.40%), Postives = 71/89 (79.78%), Query Frame = 3 
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LGCVFPEILS+ GVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWACQVVL GFVEGYR+                AFDPLG
Sbjct:  110 LGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLG 198

HSP 2 Score: 134.035 bits (336), Expect = 3.519e-67
Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            ADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNFVPGK
Sbjct:  200 ADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.327e-66
Identity = 67/89 (75.28%), Postives = 70/89 (78.65%), Query Frame = 3 
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LGCVFPEILS+ GVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVL GFVEGYR+                AFDPLG
Sbjct:  108 LGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLG 196

HSP 2 Score: 135.191 bits (339), Expect = 1.327e-66
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            ADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNFVPGK
Sbjct:  198 ADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.327e-66
Identity = 67/89 (75.28%), Postives = 70/89 (78.65%), Query Frame = 3 
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LGCVFPEILS+ GVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVL GFVEGYR+                AFDPLG
Sbjct:  108 LGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLG 196

HSP 2 Score: 135.191 bits (339), Expect = 1.327e-66
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            ADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNFVPGK
Sbjct:  198 ADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.447e-65
Identity = 67/89 (75.28%), Postives = 71/89 (79.78%), Query Frame = 3 
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LGCVFPEILS+ GVKFGEAVWFKAG+QIFSEGGLDYLGNPNL+HAQSILAIWACQVVL GFVEGYR+                AFDPLG
Sbjct:  110 LGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLG 198

HSP 2 Score: 129.028 bits (323), Expect = 1.447e-65
Identity = 61/66 (92.42%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DHI DPVANNAWAYATNFVPGK
Sbjct:  200 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.183e-65
Identity = 66/89 (74.16%), Postives = 69/89 (77.53%), Query Frame = 3 
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LGCVFPEILS+ GV FGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVL GFVEGYR+                AFDPLG
Sbjct:  110 LGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLG 198

HSP 2 Score: 132.88 bits (333), Expect = 4.183e-65
Identity = 61/66 (92.42%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENLYDH+ADPVANNAWA+ATNFVPGK
Sbjct:  200 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.275e-65
Identity = 64/89 (71.91%), Postives = 69/89 (77.53%), Query Frame = 3 
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LGCVFPEILS+ GVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILA+WA QVVL G +EGYR+                AFDPLG
Sbjct:  110 LGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLG 198

HSP 2 Score: 132.88 bits (333), Expect = 9.275e-65
Identity = 61/66 (92.42%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNFVPGK
Sbjct:  200 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.578e-64
Identity = 66/89 (74.16%), Postives = 69/89 (77.53%), Query Frame = 3 
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LGCVFPEILS+ GV FGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVL GFVEGYR+                AFDPLG
Sbjct:   82 LGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLG 170

HSP 2 Score: 131.339 bits (329), Expect = 1.578e-64
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DHIADPVANNAWAYATNFVPGK
Sbjct:  172 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.681e-64
Identity = 63/89 (70.79%), Postives = 69/89 (77.53%), Query Frame = 3 
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LGCVFPE+L++ G+KFGEAVWFKAGAQIFSEGGLDY GNPNLIHAQSILAIWACQVVL G +EGYR+                AFDPLG
Sbjct:  111 LGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLG 199

HSP 2 Score: 130.954 bits (328), Expect = 2.681e-64
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            ADDP+  AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENLYDH+ADPVANNAWAYATNFVPGK
Sbjct:  201 ADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.681e-64
Identity = 61/66 (92.42%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            ADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI+NLYDH+ADPVANNAWA+ATNFVPG+
Sbjct:  200 ADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265

HSP 2 Score: 132.494 bits (332), Expect = 2.681e-64
Identity = 65/96 (67.71%), Postives = 70/96 (72.92%), Query Frame = 3 
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGFG**PRS 290
            LGC FPE+L + GVKFGEAVWFKAG+QIF+EGGLDYLGNPNLIHAQSILAIWA QVVL GFVEGYR+                AFDPLG    P S
Sbjct:  110 LGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDS 205
[Close]
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.011e-63
Identity = 65/89 (73.03%), Postives = 70/89 (78.65%), Query Frame = 3 
Query:    3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269
            LGCVFPE+LSR GVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVL G VEGYRI                +FDPLG
Sbjct:  100 LGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLG 188

HSP 2 Score: 128.257 bits (321), Expect = 1.011e-63
Identity = 60/66 (90.91%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:  274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471
            ADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  190 ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255
The following BLAST results are available for this feature:
BLAST of CX300611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB21_GOSHI3.519e-6776.40Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB23_ORYSJ1.327e-6675.28Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.327e-6675.28Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_SOLLC1.447e-6575.28Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB26_PETSP4.183e-6574.16Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB23_TOBAC9.275e-6571.91Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB25_SOLLC1.578e-6474.16Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB21_PINTH2.681e-6470.79Chlorophyll a-b binding protein type I, chloroplas... [more]
CB215_PEA2.681e-6492.42Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB21_CUCSA1.011e-6373.03Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionC07012C04SK SaltLeaf1 Citrus clementina cDNA clone C07012C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300611 ID=CX300611; Name=CX300611; organism=Citrus clementina; type=EST; length=606bp
CTCTTGGCTGCGTCTTCCCTGAAATCCTCTCCAGAACTGGAGTGAAGTTC
GGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGG
CCTTGACTATCTTGGCAACCCCAACCTCATTCATGCTCAGAGCATTTTGG
CTATCTGGGCCTGCCAGGTTGTGCTCACGGGTTTTGTTGAAGGATACAGA
ATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACCCACTTTACCCTGGTGG
TGCTTTTGACCCACTTGGTTTTGGCTGATGACCCCGATCAATTTGCTGAG
TTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTGGCTATGTTCTCCATGTT
TGGATTCTTTGTTCAGGCTATTGTCACTGGGAAGGGTCCAATTGAGAACC
TCTACGACCACATTGCTGATCCTGTGGCCAACAATGCCTGGGCTTATGCC
ACTAATTTTGTTCCCGGAAAGTGAAGAAACTCATGATTTGATGGTGTCTG
TTTCATCTGTAACATTATTCTATCTATCGTATGTGCTTTTGTGGAAAACT
CTGTCATGGACTTACTAGTAGCTCTGTAATGTTACCATTAGAAATGCTAT
GCTCCT
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