CX300616

Overview
NameCX300616
Unique NameCX300616
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300616 vs. ExPASy Swiss-Prot
Match: TLP14_ORYSJ (Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.370e-22
Identity = 53/78 (67.95%), Postives = 55/78 (70.51%), Query Frame = 1
Query:   13 VTVASVKNFHLIXXXXXXXXXXXXXXXXXXXXXDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 246
            VTVASVKNF L+                     DHDK+ILQFGKV KDMFTMDYRYPLSAFQAFAICLSSFDTKLACE
Sbjct:  368 VTVASVKNFQLVAATQPAAGAPTPSQPAPPPPPDHDKVILQFGKVAKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 445          
BLAST of CX300616 vs. ExPASy Swiss-Prot
Match: TLP13_ORYSJ (Tubby-like F-box protein 13 OS=Oryza sativa subsp. japonica GN=TULP13 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.119e-20
Identity = 51/78 (65.38%), Postives = 53/78 (67.95%), Query Frame = 1
Query:   13 VTVASVKNFHLIXXXXXXXXXXXXXXXXXXXXXDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 246
            VTVASVKNF LI                     +HDK+ILQFGKV KDMFTMDY YPLSAFQAFAI LSSFDTKLACE
Sbjct:  363 VTVASVKNFQLIAATQPAAGAPTPSQPVPPPPPEHDKVILQFGKVAKDMFTMDYHYPLSAFQAFAISLSSFDTKLACE 440          
BLAST of CX300616 vs. ExPASy Swiss-Prot
Match: TLP11_ORYSJ (Tubby-like F-box protein 11 OS=Oryza sativa subsp. japonica GN=TULP11 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.380e-20
Identity = 50/78 (64.10%), Postives = 55/78 (70.51%), Query Frame = 1
Query:   13 VTVASVKNFHLIXXXXXXXXXXXXXXXXXXXXXDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 246
            VTVASVKNF L+                     +HD +ILQFGKVGKDMFTMDYRYP+SAFQAFAICLSSFDTK+ACE
Sbjct:  340 VTVASVKNFQLVASDESNPTNQ-----------EHDDVILQFGKVGKDMFTMDYRYPISAFQAFAICLSSFDTKIACE 406          
BLAST of CX300616 vs. ExPASy Swiss-Prot
Match: TLP10_ARATH (Tubby-like F-box protein 10 OS=Arabidopsis thaliana GN=TULP10 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.380e-20
Identity = 52/80 (65.00%), Postives = 55/80 (68.75%), Query Frame = 1
Query:   13 VTVASVKNFHLIXXXXXXXXXXXXXXXXXXXXX--DHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 246
            VTVASVKNF L+                       + DK+ILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE
Sbjct:  366 VTVASVKNFQLVAARQPQPQGTGAAAAPTSAPAHPEQDKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 445          
BLAST of CX300616 vs. ExPASy Swiss-Prot
Match: TLP8_ORYSJ (Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.199e-19
Identity = 52/78 (66.67%), Postives = 54/78 (69.23%), Query Frame = 1
Query:   13 VTVASVKNFHLIXXXXXXXXXXXXXXXXXXXXXDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 246
            VT+ASVKNF LI                     + DKIILQFGKV KDMFTMDYRYPLSAFQAFAICLSSFDTKLACE
Sbjct:  370 VTIASVKNFQLIAAPAQPPAGAPTPSQPAPP--EQDKIILQFGKVAKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 445          
BLAST of CX300616 vs. ExPASy Swiss-Prot
Match: TLP12_ORYSJ (Tubby-like F-box protein 12 OS=Oryza sativa subsp. japonica GN=TULP12 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.199e-19
Identity = 53/86 (61.63%), Postives = 55/86 (63.95%), Query Frame = 1
Query:   13 VTVASVKNFHLIXXXXXXXXXXXXXXXXXXXXX--------DHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 246
            VTVASVKNF LI                             DH K+ILQFGKVGKDMFTMDYRYPLSAFQAFAICL+SFDTKLACE
Sbjct:  366 VTVASVKNFQLIAAASSESSQLEQQQQQQQQNHASSSSSASDHGKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 451          
BLAST of CX300616 vs. ExPASy Swiss-Prot
Match: TLP6_ORYSJ (Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.948e-19
Identity = 47/78 (60.26%), Postives = 55/78 (70.51%), Query Frame = 1
Query:   13 VTVASVKNFHLIXXXXXXXXXXXXXXXXXXXXXDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 246
            VTVASVKNF L+                     + DK+ILQFGK+GKD+FTMDYRYP+SAFQ+FAICLSSFDTK+ACE
Sbjct:  337 VTVASVKNFQLVASDENGPTNQ-----------EQDKVILQFGKIGKDLFTMDYRYPISAFQSFAICLSSFDTKIACE 403          
BLAST of CX300616 vs. ExPASy Swiss-Prot
Match: TLP3_ORYSJ (Tubby-like F-box protein 3 OS=Oryza sativa subsp. japonica GN=TULP3 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.769e-19
Identity = 49/78 (62.82%), Postives = 54/78 (69.23%), Query Frame = 1
Query:   13 VTVASVKNFHLIXXXXXXXXXXXXXXXXXXXXXDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 246
            VT+ASVKNF L+                     D +K+ILQFGKV +DMFTMDYRYPLSAFQAFAICLSSFDTKLACE
Sbjct:  373 VTIASVKNFQLVAAPSPPPAGAPTPSQPGPA--DPEKVILQFGKVARDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 448          
BLAST of CX300616 vs. ExPASy Swiss-Prot
Match: TLP2_ARATH (Tubby-like F-box protein 2 OS=Arabidopsis thaliana GN=TULP2 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.015e-18
Identity = 47/78 (60.26%), Postives = 55/78 (70.51%), Query Frame = 1
Query:   13 VTVASVKNFHLIXXXXXXXXXXXXXXXXXXXXXDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 246
            VTVASVKNF L+                     +H+++ILQFGK+GKD+FTMDYRYPLSAFQAFAIC+SSFDTK ACE
Sbjct:  325 VTVASVKNFQLVAEIDASLDAPPE---------EHERVILQFGKIGKDIFTMDYRYPLSAFQAFAICISSFDTKPACE 393          
BLAST of CX300616 vs. ExPASy Swiss-Prot
Match: TLP1_ARATH (Tubby-like F-box protein 1 OS=Arabidopsis thaliana GN=TULP1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.015e-18
Identity = 53/85 (62.35%), Postives = 54/85 (63.53%), Query Frame = 1
Query:   13 VTVASVKNFHLIXXXXXXXXXXXXXXXXXXXXXDH-------DKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 246
            VTVASVKNF LI                              DKIILQFGKVGKDMFTMD+RYPLSAFQAFAICLSSFDTKLACE
Sbjct:  371 VTVASVKNFQLIAANQPQPQPQPQPQPQPLTQPQPSGQTDGPDKIILQFGKVGKDMFTMDFRYPLSAFQAFAICLSSFDTKLACE 455          
The following BLAST results are available for this feature:
BLAST of CX300616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
TLP14_ORYSJ3.370e-2267.95Tubby-like F-box protein 14 OS=Oryza sativa subsp.... [more]
TLP13_ORYSJ4.119e-2065.38Tubby-like F-box protein 13 OS=Oryza sativa subsp.... [more]
TLP11_ORYSJ5.380e-2064.10Tubby-like F-box protein 11 OS=Oryza sativa subsp.... [more]
TLP10_ARATH5.380e-2065.00Tubby-like F-box protein 10 OS=Arabidopsis thalian... [more]
TLP8_ORYSJ1.199e-1966.67Tubby-like F-box protein 8 OS=Oryza sativa subsp. ... [more]
TLP12_ORYSJ1.199e-1961.63Tubby-like F-box protein 12 OS=Oryza sativa subsp.... [more]
TLP6_ORYSJ5.948e-1960.26Tubby-like F-box protein 6 OS=Oryza sativa subsp. ... [more]
TLP3_ORYSJ7.769e-1962.82Tubby-like F-box protein 3 OS=Oryza sativa subsp. ... [more]
TLP2_ARATH1.015e-1860.26Tubby-like F-box protein 2 OS=Arabidopsis thaliana... [more]
TLP1_ARATH1.015e-1862.35Tubby-like F-box protein 1 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC07012C09SK SaltLeaf1 Citrus clementina cDNA clone C07012C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300616 ID=CX300616; Name=CX300616; organism=Citrus clementina; type=EST; length=586bp
TCGGCACGAGGGGTGACTGTTGCATCAGTCAAGAATTTCCATCTGATTGC
TGCAACTCAGCCTGCAGCTGGTGCGCCCACACCATCGCAGCCACCCCCGC
CGCCCCCGTCAGATCACGATAAGATTATTCTGCAATTTGGCAAAGTTGGC
AAGGATATGTTCACAATGGATTACCGGTATCCTCTGTCTGCGTTTCAGGC
TTTTGCGATCTGCTTGAGTAGTTTCGACACCAAATTGGCATGTGAATAGA
AGAAAATAGAGAGGCAAGAAGTAGAAAATTTTAGTTTGTTCTGCTTGTTT
TCTTTTTCTAGAGTTCTATATAGAATGAAGAAGTTGTATGCAGTGTACAA
CACATAGCTGGACTTCAAATTACAGGACACCATATCTGTGATCATGGGAG
AAGAATCCTGTTTTTTCTTTGTTTCCTCAAATTTCGGTTATTTTTTTTAA
CTTTGATTTAGCTTGCTCTGTATGTTTCCTATTGTTTAATCTAAAAAGAA
ACATTTCAAAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAACCCTCGAGGGGGGCGCCCGGT
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