CX300624

Overview
NameCX300624
Unique NameCX300624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length291
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12194 contig Ccv1_Contig12194:1349..1639. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300624 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.028e-15
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 3 
Query:    3 QSVVDLAHLVATKWPGVAAGGSGDPLEDFCQTNPADEECKVYE 131
            Q VVDLAHLVA+KWPG  A GSGDPLEDFC+TNPADEECKVY+
Sbjct:  405 QRVVDLAHLVASKWPGAEAVGSGDPLEDFCKTNPADEECKVYD 447
[Close]
BLAST of CX300624 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.754e-15
Identity = 36/43 (83.72%), Postives = 37/43 (86.05%), Query Frame = 3 
Query:    3 QSVVDLAHLVATKWPGVAAGGSGDPLEDFCQTNPADEECKVYE 131
            Q VVDLAHLVA KWPG    GSGDPLEDFC+TNPADEECKVYE
Sbjct:  409 QRVVDLAHLVANKWPGTPKVGSGDPLEDFCETNPADEECKVYE 451
[Close]
BLAST of CX300624 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.006e-12
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = 3 
Query:    3 QSVVDLAHLVATKWPGVAAG-GSGDPLEDFCQTNPADEECKVYE 131
            Q VVDLA LVA KWPG+     SGDPLEDFC+ NPADEECK+YE
Sbjct:  408 QRVVDLADLVANKWPGLEGSVASGDPLEDFCKDNPADEECKLYE 451
The following BLAST results are available for this feature:
BLAST of CX300624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
G3PB_ARATH1.028e-1583.72Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_PEA1.754e-1583.72Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_SPIOL9.006e-1272.73Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
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Properties
Property NameValue
Genbank descriptionC07012D05SK SaltLeaf1 Citrus clementina cDNA clone C07012D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300624 ID=CX300624; Name=CX300624; organism=Citrus clementina; type=EST; length=291bp
GCCAAAGTGTTGTCGATTTGGCGCATTTGGTTGCAACCAAGTGGCCAGGC
GTGGCTGCAGGCGGAAGCGGAGACCCATTGGAGGACTTCTGCCAGACAAA
CCCTGCTGATGAGGAGTGCAAAGTTTATGAAGCTTAAATTCTTTCTTAAT
TGGTTGGCTAATTAATTACATAGGTTTTTCGCAGCCTTTGTCACAAAATG
CTTTTATATTAATGACAACTGAGTGAGTTGAACAGACAATTTATCAAATT
ATATGTCAAGCCGATGATCTTGCAAAAAAAAAAAAAAAAAA
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