CX300627

Overview
NameCX300627
Unique NameCX300627
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length263
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AV3_ORYSJ (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.781e-17
Identity = 38/56 (67.86%), Postives = 41/56 (73.21%), Query Frame = 2
Query:   50 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            PVSRSSRAGLQFPVGR+HR LK+              Y+AAILEYLTAEVLELAGN
Sbjct:   29 PVSRSSRAGLQFPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGN 84          

HSP 2 Score: 32.7278 bits (73), Expect = 9.781e-17
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  213 GMASRDLRVKRITPRHL 263
            G AS+DL+VKRITPRHL
Sbjct:   83 GNASKDLKVKRITPRHL 99          
BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 9.788e-17
Identity = 39/56 (69.64%), Postives = 41/56 (73.21%), Query Frame = 2
Query:   50 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            P++RSSRAGLQFPVGRVHRLLK               YTAAILEYLTAEVLELAGN
Sbjct:   26 PITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGN 81          

HSP 2 Score: 31.187 bits (69), Expect = 9.788e-17
Identity = 13/17 (76.47%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  213 GMASRDLRVKRITPRHL 263
            G AS+DL+VKRI+PRHL
Sbjct:   80 GNASKDLKVKRISPRHL 96          
BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AV2_ORYSJ (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.653e-16
Identity = 38/56 (67.86%), Postives = 40/56 (71.43%), Query Frame = 2
Query:   50 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            PVSRSSRAG+QFPVGR+HR LK               YTAAILEYLTAEVLELAGN
Sbjct:   31 PVSRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGN 86          

HSP 2 Score: 32.7278 bits (73), Expect = 1.653e-16
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  213 GMASRDLRVKRITPRHL 263
            G AS+DL+VKRITPRHL
Sbjct:   85 GNASKDLKVKRITPRHL 101          
BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AV1_ORYSJ (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.653e-16
Identity = 38/56 (67.86%), Postives = 40/56 (71.43%), Query Frame = 2
Query:   50 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            PVSRSSRAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGN
Sbjct:   30 PVSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGN 85          

HSP 2 Score: 32.7278 bits (73), Expect = 1.653e-16
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  213 GMASRDLRVKRITPRHL 263
            G AS+DL+VKRITPRHL
Sbjct:   84 GNASKDLKVKRITPRHL 100          
BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AZL_XENTR (Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 6.151e-16
Identity = 37/55 (67.27%), Postives = 40/55 (72.73%), Query Frame = 2
Query:   53 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            ++RSSRAGLQFPVGR+HRLLK               YTAAILEYLTAEVLELAGN
Sbjct:   18 ITRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGN 72          

HSP 2 Score: 31.187 bits (69), Expect = 6.151e-16
Identity = 13/17 (76.47%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  213 GMASRDLRVKRITPRHL 263
            G AS+DL+VKRI+PRHL
Sbjct:   71 GNASKDLKVKRISPRHL 87          
BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AZL_XENLA (Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 6.151e-16
Identity = 37/55 (67.27%), Postives = 40/55 (72.73%), Query Frame = 2
Query:   53 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            ++RSSRAGLQFPVGR+HRLLK               YTAAILEYLTAEVLELAGN
Sbjct:   18 ITRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGN 72          

HSP 2 Score: 31.187 bits (69), Expect = 6.151e-16
Identity = 13/17 (76.47%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  213 GMASRDLRVKRITPRHL 263
            G AS+DL+VKRI+PRHL
Sbjct:   71 GNASKDLKVKRISPRHL 87          
BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AV_CAEEL (Histone H2A.V OS=Caenorhabditis elegans GN=htz-1 PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 7.971e-16
Identity = 36/55 (65.45%), Postives = 40/55 (72.73%), Query Frame = 2
Query:   53 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            VSRS+RAGLQFPVGR+HR LK+              Y+AAILEYLTAEVLELAGN
Sbjct:   20 VSRSARAGLQFPVGRIHRFLKQRTTSSGRVGATAAVYSAAILEYLTAEVLELAGN 74          

HSP 2 Score: 32.7278 bits (73), Expect = 7.971e-16
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  213 GMASRDLRVKRITPRHL 263
            G AS+DL+VKRITPRHL
Sbjct:   73 GNASKDLKVKRITPRHL 89          
BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AV1_ARATH (Histone H2A variant 1 OS=Arabidopsis thaliana GN=H2AV PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.983e-16
Identity = 35/56 (62.50%), Postives = 40/56 (71.43%), Query Frame = 2
Query:   50 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            P+SRS+RAG+QFPVGR+HR LK               YTA+ILEYLTAEVLELAGN
Sbjct:   28 PISRSARAGIQFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGN 83          

HSP 2 Score: 32.7278 bits (73), Expect = 7.983e-16
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  213 GMASRDLRVKRITPRHL 263
            G AS+DL+VKRITPRHL
Sbjct:   82 GNASKDLKVKRITPRHL 98          
BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AV2_ARATH (Probable histone H2A variant 2 OS=Arabidopsis thaliana GN=At2g38810 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.038e-15
Identity = 35/55 (63.64%), Postives = 40/55 (72.73%), Query Frame = 2
Query:   53 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            +SRSSRAG+QFPVGR+HR LK+              YTA+ILEYLTAEVLELAGN
Sbjct:   29 ISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGN 83          

HSP 2 Score: 32.7278 bits (73), Expect = 1.038e-15
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  213 GMASRDLRVKRITPRHL 263
            G AS+DL+VKRITPRHL
Sbjct:   82 GNASKDLKVKRITPRHL 98          
BLAST of CX300627 vs. ExPASy Swiss-Prot
Match: H2AV_DROME (Histone H2A.v OS=Drosophila melanogaster GN=His2Av PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.957e-15
Identity = 36/55 (65.45%), Postives = 39/55 (70.91%), Query Frame = 2
Query:   53 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGN 217
            VSRS+RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGN
Sbjct:   18 VSRSARAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGN 72          

HSP 2 Score: 32.7278 bits (73), Expect = 2.957e-15
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  213 GMASRDLRVKRITPRHL 263
            G AS+DL+VKRITPRHL
Sbjct:   71 GNASKDLKVKRITPRHL 87          
The following BLAST results are available for this feature:
BLAST of CX300627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
H2AV3_ORYSJ9.781e-1767.86Probable histone H2A variant 3 OS=Oryza sativa sub... [more]
H2AV3_ARATH9.788e-1769.64Probable histone H2A variant 3 OS=Arabidopsis thal... [more]
H2AV2_ORYSJ1.653e-1667.86Probable histone H2A variant 2 OS=Oryza sativa sub... [more]
H2AV1_ORYSJ1.653e-1667.86Probable histone H2A variant 1 OS=Oryza sativa sub... [more]
H2AZL_XENTR6.151e-1667.27Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl... [more]
H2AZL_XENLA6.151e-1667.27Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE... [more]
H2AV_CAEEL7.971e-1665.45Histone H2A.V OS=Caenorhabditis elegans GN=htz-1 P... [more]
H2AV1_ARATH7.983e-1662.50Histone H2A variant 1 OS=Arabidopsis thaliana GN=H... [more]
H2AV2_ARATH1.038e-1563.64Probable histone H2A variant 2 OS=Arabidopsis thal... [more]
H2AV_DROME2.957e-1565.45Histone H2A.v OS=Drosophila melanogaster GN=His2Av... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07012D08SK SaltLeaf1 Citrus clementina cDNA clone C07012D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300627 ID=CX300627; Name=CX300627; organism=Citrus clementina; type=EST; length=263bp
AACAGGCAAAACCACCATTAACAACAACAAGGATAAGGACAAGAAGAAAC
CCGTCTCCCGTTCTTCTCGTGCTGGTCTTCAGTTCCCAGTGGGAAGGGTC
CATCGTCTGCTAAAGGAAAGGGCTGCTGCTCACGGAAGGGTTGGTGCAAC
AGCTGCTGTTTATACAGCAGCCATTTTGGAGTATCTAACTGCCGAAGTGT
TGGAGTTGGCAGGGAATGGCTAGCAGGGATTTGAGGGTCAAACGTATTAC
TCCAAGGCATTTG
back to top