CX300644

Overview
NameCX300644
Unique NameCX300644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9454 contig Ccv1_Contig9454:958..1617. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: IDND_VITVI (L-idonate 5-dehydrogenase OS=Vitis vinifera GN=GSVIVT00012394001 PE=1 SV=2)

HSP 1 Score: 277.33 bits (708), Expect = 4.792e-74
Identity = 134/162 (82.72%), Postives = 149/162 (91.98%), Query Frame = 1
Query:    1 AFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFNL 486
            AFGAPRIV+VDVDD RL++AK LGAD+I++VSTN+QD+ EEV KIQ  M TG+DVSFDC GFNKTMSTAL+ATRAGGKVCLVG+   EMTVPLTPAAAREVD+VG+FRY+NTWPLCLEFLRSGKIDVKPLITHRF FSQK+VEEAFETSARGG AIKVMFNL
Sbjct:  205 AFGAPRIVLVDVDDQRLAIAKDLGADDIIRVSTNIQDLDEEVAKIQSTMVTGVDVSFDCVGFNKTMSTALNATRAGGKVCLVGLAQSEMTVPLTPAAAREVDIVGIFRYRNTWPLCLEFLRSGKIDVKPLITHRFTFSQKDVEEAFETSARGGNAIKVMFNL 366          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: DHSO_BOVIN (Sorbitol dehydrogenase OS=Bos taurus GN=SORD PE=2 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 4.696e-29
Identity = 70/160 (43.75%), Postives = 105/160 (65.62%), Query Frame = 1
Query:    1 AFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNL-QDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVM 477
            A GA ++V+ D+   RLS AK++GAD I+++S    Q+IA++VE +   +G+  +V+ +C G   ++   + AT +GG + LVG+G    +VPL  AA REVD+ GVFRY NTWP+ +  L S  ++VKPL+THRF    ++  EAFETS + G  +KVM
Sbjct:  193 AMGAAQVVVTDLSASRLSKAKEVGADFILQISNESPQEIAKKVEGL---LGSKPEVTIECTGVETSIQAGIYATHSGGTLVLVGLGSEMTSVPLVHAATREVDIKGVFRYCNTWPMAISMLASKSVNVKPLVTHRFPL--EKALEAFETSKK-GLGLKVM 346          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: DHSO_SHEEP (Sorbitol dehydrogenase OS=Ovis aries GN=SORD PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.009e-29
Identity = 67/159 (42.14%), Postives = 102/159 (64.15%), Query Frame = 1
Query:    1 AFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVM 477
            A GA ++V+ D+   RLS AK++GAD I+++S    +  E  +K++  +G+  +V+ +C G   ++   + AT +GG + LVG+G    +VPL  AA REVD+ GVFRY NTWP+ +  L S  ++VKPL+THRF    ++  EAFETS + G  +KVM
Sbjct:  191 AMGAAQVVVTDLSASRLSKAKEVGADFILEISNESPE--EIAKKVEGLLGSKPEVTIECTGVETSIQAGIYATHSGGTLVLVGLGSEMTSVPLVHAATREVDIKGVFRYCNTWPMAISMLASKSVNVKPLVTHRFPL--EKALEAFETSKK-GLGLKVM 344          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: DHSO_RAT (Sorbitol dehydrogenase OS=Rattus norvegicus GN=Sord PE=1 SV=4)

HSP 1 Score: 126.331 bits (316), Expect = 1.366e-28
Identity = 68/160 (42.50%), Postives = 105/160 (65.62%), Query Frame = 1
Query:    1 AFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNL-QDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVM 477
            A GA ++V++D+   RL+ AK++GAD  ++V+     DIA++VE +   +G+  +V+ +C G   ++ T + AT +GG + +VGMG   + +PL  AA REVD+ GVFRY NTWP+ +  L S  ++VKPL+THRF    ++  EAFET A+ G  +KVM
Sbjct:  194 AMGASQVVVIDLSASRLAKAKEVGADFTIQVAKETPHDIAKKVESV---LGSKPEVTIECTGAESSVQTGIYATHSGGTLVVVGMGPEMINLPLVHAAVREVDIKGVFRYCNTWPMAVSMLASKTLNVKPLVTHRFPL--EKAVEAFET-AKKGLGLKVM 347          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: DHSO_HUMAN (Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 2.330e-28
Identity = 69/160 (43.12%), Postives = 103/160 (64.38%), Query Frame = 1
Query:    1 AFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNL-QDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVM 477
            A GA ++V+ D+   RLS AK++GAD ++++S    Q+IA +VE +   +G   +V+ +C G   ++   + ATR+GG + LVG+G    TVPL  AA REVD+ GVFRY NTWP+ +  L S  ++VKPL+THRF    ++  EAFET  + G  +K+M
Sbjct:  194 AMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGL---LGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVFRYCNTWPVAISMLASKSVNVKPLVTHRFPL--EKALEAFETFKK-GLGLKIM 347          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: DHSO_MOUSE (Sorbitol dehydrogenase OS=Mus musculus GN=Sord PE=1 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 3.044e-28
Identity = 68/160 (42.50%), Postives = 103/160 (64.38%), Query Frame = 1
Query:    1 AFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNL-QDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVM 477
            A GA ++V+ D+   RL+ AK++GAD  ++V     Q+IA +VE +   +G+  +V+ +C G   ++ T + AT +GG + +VGMG   + +PL  AA REVD+ GVFRY NTWP+ +  L S  ++VKPL+THRF    ++  EAFET A+ G  +KVM
Sbjct:  194 AMGAAQVVVTDLSASRLTKAKEVGADFTIQVGKETPQEIASKVESL---LGSKPEVTIECTGAESSVQTGIYATHSGGTLVIVGMGAEMVNLPLVHAAIREVDIKGVFRYCNTWPMAISMLASKTLNVKPLVTHRFPL--EKAVEAFET-AKKGVGLKVM 347          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: DHSO_MACFA (Sorbitol dehydrogenase OS=Macaca fascicularis GN=SORD PE=2 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 6.780e-28
Identity = 67/160 (41.88%), Postives = 103/160 (64.38%), Query Frame = 1
Query:    1 AFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNL-QDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVM 477
            A GA ++V+ D+   RLS AK++GAD ++++S    Q+IA +VE +   +G   +V+ +C G   ++   + ATR+GG + LVG+G    T+PL  AA REVD+ GVFRY NTWP+ +  L S  +++KPL+THRF    ++  EAFET  + G  +K+M
Sbjct:  194 AMGAAQVVVTDLSAPRLSKAKEIGADLVLQISKESPQEIAGKVEGL---LGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTIPLLHAAVREVDIKGVFRYCNTWPVAISMLASKSVNIKPLVTHRFPL--EKALEAFETFKK-GLGLKIM 347          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: DHSO_PONAB (Sorbitol dehydrogenase OS=Pongo abelii GN=SORD PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.855e-28
Identity = 68/160 (42.50%), Postives = 102/160 (63.75%), Query Frame = 1
Query:    1 AFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNL-QDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVM 477
            A GA ++V+ D+   RLS AK++GAD ++++S    Q+IA +VE +   +G   +V+ +C G   ++   + AT +GG + LVG+G    T+PL  AA REVD+ GVFRY NTWP+ +  L S  ++VKPLITHRF    ++  EAFET  + G  +K+M
Sbjct:  194 AMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGL---LGCKPEVTIECTGAGASIQAGIYATHSGGTLVLVGLGSEMTTIPLLHAAIREVDIKGVFRYCNTWPVAISMLASKSVNVKPLITHRFPL--EKALEAFETFKK-GLGLKIM 347          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: DHSO_BOMMO (Sorbitol dehydrogenase OS=Bombyx mori GN=SDH PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.577e-23
Identity = 64/162 (39.51%), Postives = 92/162 (56.79%), Query Frame = 1
Query:    1 AFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFNL 486
            A GA +I++ DV   RL  A +LGADN++ V     D  E VEKI K +G   DVS D  G+      AL  T+  G V +VG+  + + +PL+ A  REVDVVG FR  NT+   L  + SG I +   ITHRF  +  + +EA +  A+ G A+K++ ++
Sbjct:  189 AMGASKIILTDVVQSRLDAALELGADNVLLVRREYTD-EEVVEKIVKLLGDRPDVSIDACGYGSAQRVALLVTKTAGLVLVVGIADKTVELPLSQALLREVDVVGSFRIMNTYQPALAAVSSGAIPLDKFITHRFPLN--KTKEALDL-AKSGAAMKILIHV 346          
BLAST of CX300644 vs. ExPASy Swiss-Prot
Match: DHSO_BACSU (Sorbitol dehydrogenase OS=Bacillus subtilis GN=gutB PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 4.706e-21
Identity = 53/142 (37.32%), Postives = 87/142 (61.27%), Query Frame = 1
Query:    1 AFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM-GHREMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKE 423
            AFGA  I++ D++  RL  AKK+GA +I+ +    QD  EE++ I      G+DV+++ AG    + +AL++ R GGK+ +VG+    E+ + +   A  E+D+ G+FRY NT+P  +EFL SG +D K L+T ++   Q +
Sbjct:  194 AFGAGTIIVTDLEPLRLEAAKKMGATHIINIRE--QDALEEIKTITN--DRGVDVAWETAGNPAALQSALASVRRGGKLAIVGLPSQNEIPLNVPFIADNEIDIYGIFRYANTYPKGIEFLASGIVDTKHLVTDQYSLEQTQ 331          
The following BLAST results are available for this feature:
BLAST of CX300644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
IDND_VITVI4.792e-7482.72L-idonate 5-dehydrogenase OS=Vitis vinifera GN=GSV... [more]
DHSO_BOVIN4.696e-2943.75Sorbitol dehydrogenase OS=Bos taurus GN=SORD PE=2 ... [more]
DHSO_SHEEP8.009e-2942.14Sorbitol dehydrogenase OS=Ovis aries GN=SORD PE=1 ... [more]
DHSO_RAT1.366e-2842.50Sorbitol dehydrogenase OS=Rattus norvegicus GN=Sor... [more]
DHSO_HUMAN2.330e-2843.13Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=... [more]
DHSO_MOUSE3.044e-2842.50Sorbitol dehydrogenase OS=Mus musculus GN=Sord PE=... [more]
DHSO_MACFA6.780e-2841.88Sorbitol dehydrogenase OS=Macaca fascicularis GN=S... [more]
DHSO_PONAB8.855e-2842.50Sorbitol dehydrogenase OS=Pongo abelii GN=SORD PE=... [more]
DHSO_BOMMO8.577e-2339.51Sorbitol dehydrogenase OS=Bombyx mori GN=SDH PE=2 ... [more]
DHSO_BACSU4.706e-2137.32Sorbitol dehydrogenase OS=Bacillus subtilis GN=gut... [more]

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Properties
Property NameValue
Genbank descriptionC07012F02SK SaltLeaf1 Citrus clementina cDNA clone C07012F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300644 ID=CX300644; Name=CX300644; organism=Citrus clementina; type=EST; length=660bp
GCTTTTGGAGCTCCTAGAATTGTCATTGTGGATGTGGATGACTATCGTTT
ATCTGTTGCAAAGAAACTTGGTGCAGATAATATTGTTAAAGTTTCAACAA
ATTTGCAGGACATAGCTGAAGAAGTGGAAAAGATACAGAAAGCCATGGGG
ACAGGAATAGATGTGAGCTTTGATTGTGCAGGCTTTAACAAAACCATGTC
AACAGCACTGAGTGCTACTCGTGCAGGTGGTAAAGTTTGCCTCGTGGGGA
TGGGTCATCGTGAAATGACTGTCCCACTCACCCCAGCTGCTGCAAGGGAG
GTGGATGTGGTGGGGGTGTTTCGCTACAAGAACACCTGGCCACTGTGTCT
GGAGTTCCTTAGAAGCGGAAAGATTGATGTAAAGCCCCTTATCACGCATA
GGTTTGGTTTCTCCCAGAAAGAAGTGGAAGAGGCCTTTGAAACAAGTGCT
CGTGGTGGTACTGCAATCAAGGTCATGTTTAATCTGTAATGTTTAATCTG
TAAAATACAATGTACTGCAATCAAGGTCATGTTTAATCTGTCAAATACAA
CGAACTGCACTCAAGGTCATGTTTAATCTGTAAAATACAACGTACATGTA
AACGTTTGGGCAAAAGATGAAATAAAATGGAATTGTCGCCGTGTAAAAAA
AAAAAAAAAA
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