CX300648
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300648 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.077e-34 Identity = 46/74 (62.16%), Postives = 49/74 (66.22%), Query Frame = 2 Query: 56 STLLPTFDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVE 277 ST P DG+L GDFGFDPLGL DPESLRW QAELVH R+AM G AGI +LL GI P WY AG E Sbjct: 72 STPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQE 145 HSP 2 Score: 54.6842 bits (130), Expect = 2.077e-34 Identity = 38/96 (39.58%), Postives = 53/96 (55.21%), Query Frame = 3 Query: 285 FASTRTLFIVQLLLMGFAETKRYMDYISPGSQAKEGSFFGLEASLEGFRAWLPWRSSAKPSLAWLKIS-EMLRDWKLKEIKNGRLAMVAMLGIFVQ 569 F T TLFIV+L+L+G+AE +R+ D I PG + F L G P P L W S +++ + KEIKNGRLAM+A++G + Q Sbjct: 147 FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDP-LGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQ 239 HSP 3 Score: 32.3426 bits (72), Expect = 2.077e-34 Identity = 12/23 (52.17%), Postives = 15/23 (65.22%), Query Frame = 1 Query: 589 GPIDNILEHLSDPWHKTFIQTFA 657 GPIDN+ HL+DP H T F+ Sbjct: 246 GPIDNLFAHLADPGHATIFAAFS 268 HSP 4 Score: 27.335 bits (59), Expect = 2.077e-34 Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 Query: 34 RPTWLPGVDPPPYL 75 RP W PG PPP+L Sbjct: 65 RPLWFPGSTPPPWL 78
BLAST of CX300648 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.619e-33 Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 2 Query: 80 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVE 277 G+L GD GFDPLGL EDPE+LRW+VQAELV+ R+AM GVAG+L ++ GI +P WY AG E Sbjct: 68 GSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEE 133 HSP 2 Score: 53.9138 bits (128), Expect = 3.619e-33 Identity = 35/101 (34.65%), Postives = 55/101 (54.46%), Query Frame = 3 Query: 285 FASTRTLFIVQLLLMGFAETKRYMDYISPGSQAKEGSF--FGLEASLEGFRAWLPWRSSAKPSLAWLKISEMLRDWKLKEIKNGRLAMVAMLGIFVQASVT 581 FAS+ TLF+++ +L + E +R+ D +PGS ++ F + L A G+ + + P+L + K KEI NGRLAM+A LG +Q +VT Sbjct: 135 FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTL----------EAKEKEIANGRLAMLAFLGFIIQHNVT 225 HSP 3 Score: 42.3578 bits (98), Expect = 3.619e-33 Identity = 14/25 (56.00%), Postives = 19/25 (76.00%), Query Frame = 1 Query: 589 GPIDNILEHLSDPWHKTFIQTFANS 663 GP DN+L+H+SDPWH T +QT + Sbjct: 228 GPFDNLLQHISDPWHNTIVQTLGGN 252 HSP 4 Score: 20.7866 bits (42), Expect = 3.619e-33 Identity = 7/11 (63.64%), Postives = 8/11 (72.73%), Query Frame = 1 Query: 43 WLPGVDPPPYL 75 WLPG+ P YL Sbjct: 56 WLPGLASPGYL 66
BLAST of CX300648 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 6.080e-33 Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 2 Query: 80 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG 268 G+LAGD GFDPLGL EDPE+L+W+VQAELV+ R+AM GVAG+L ++ GI +P WY+AG Sbjct: 69 GSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAG 131 HSP 2 Score: 50.447 bits (119), Expect = 6.080e-33 Identity = 33/101 (32.67%), Postives = 54/101 (53.47%), Query Frame = 3 Query: 285 FASTRTLFIVQLLLMGFAETKRYMDYISPGSQAKEGSF--FGLEASLEGFRAWLPWRSSAKPSLAWLKISEMLRDWKLKEIKNGRLAMVAMLGIFVQASVT 581 FAS+ TLF+++ +L + E +R+ D +PGS ++ F + L G+ + + P+ ++ K KE+ NGRLAM+A LG VQ +VT Sbjct: 136 FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFAPT----------QEAKEKELANGRLAMLAFLGFVVQHNVT 226 HSP 3 Score: 43.5134 bits (101), Expect = 6.080e-33 Identity = 15/22 (68.18%), Postives = 19/22 (86.36%), Query Frame = 1 Query: 589 GPIDNILEHLSDPWHKTFIQTF 654 GP +N+L+HLSDPWH T +QTF Sbjct: 229 GPFENLLQHLSDPWHNTIVQTF 250 HSP 4 Score: 21.1718 bits (43), Expect = 6.080e-33 Identity = 7/11 (63.64%), Postives = 8/11 (72.73%), Query Frame = 1 Query: 43 WLPGVDPPPYL 75 WLPG+ P YL Sbjct: 57 WLPGLASPDYL 67
BLAST of CX300648 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.018e-32 Identity = 41/67 (61.19%), Postives = 47/67 (70.15%), Query Frame = 2 Query: 77 DGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVE 277 DG+L GDFGFDPLGLG DPESL+W QAELVH+R+AM G AGI + L G+ P WY AG E Sbjct: 79 DGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQE 145 HSP 2 Score: 53.9138 bits (128), Expect = 1.018e-32 Identity = 36/96 (37.50%), Postives = 53/96 (55.21%), Query Frame = 3 Query: 285 FASTRTLFIVQLLLMGFAETKRYMDYISPGSQAKEGSFFGLEASLEGFRAWLPWRSSAKPSLAWLKIS-EMLRDWKLKEIKNGRLAMVAMLGIFVQ 569 F T TLF+++L+L+G+AE +R+ D I PG + F L G P P L W S +++ + KEIKNGRLAM+A++G + Q Sbjct: 147 FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDP-LGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQ 239 HSP 3 Score: 32.3426 bits (72), Expect = 1.018e-32 Identity = 12/23 (52.17%), Postives = 15/23 (65.22%), Query Frame = 1 Query: 589 GPIDNILEHLSDPWHKTFIQTFA 657 GPIDN+ HL+DP H T F+ Sbjct: 246 GPIDNLFAHLADPGHATIFAAFS 268 HSP 4 Score: 25.0238 bits (53), Expect = 1.018e-32 Identity = 9/23 (39.13%), Postives = 12/23 (52.17%), Query Frame = 1 Query: 7 LATVVRAQQRPTWLPGVDPPPYL 75 ++ V RP W PG PP +L Sbjct: 56 VSAVAADPDRPLWFPGSTPPEWL 78
BLAST of CX300648 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 3.308e-26 Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 3 Query: 264 PVQLNSSFASTRTLFIVQLLLMGFAETKRYMDYISPGSQAKEGSFFGLEASLEGFRAWLPWRSSAKPSLAWLKISEMLRDWKLKEIKNGRLAMVAMLGIFVQASVT 581 P + +A TLF++++ LMGFAE +R+ D+ PGS K+ F GLE L G L + K + +++ KLKEIKNGRLAM+A+LG F+QA VT Sbjct: 142 PAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQ-YFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVT 246 HSP 2 Score: 56.9954 bits (136), Expect = 3.308e-26 Identity = 34/97 (35.05%), Postives = 45/97 (46.39%), Query Frame = 2 Query: 11 QLWFEPSSDQHGSLESTLLPTFDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI---RELPVWYEAGAV 274 QLWF L DG L GDFGFDPLGL DPE +W E+++ RFAM G AG + ++L G+ W++ G + Sbjct: 54 QLWFASKQS---------LSYLDGRLPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVI 140 HSP 3 Score: 26.1794 bits (56), Expect = 3.308e-26 Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 1 Query: 586 VGPIDNILEHLSDP 627 VGP N+L+HL+DP Sbjct: 248 VGPYQNLLDHLADP 261
BLAST of CX300648 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.771e-24 Identity = 45/107 (42.06%), Postives = 63/107 (58.88%), Query Frame = 3 Query: 264 PVQLNSSFASTRTLFIVQLLLMGFAETKRYMDYISPGSQAKEGSFFGLEASLEGF-RAWLPWRSSAKPSLAWLKISEMLRDWKLKEIKNGRLAMVAMLGIFVQASVT 581 P + +A TLF++++ LMGFAE +R+ D+ PGS K+ F GLE G P P L + K + L++ KLKE+KNGRLAM+A+LG F+Q VT Sbjct: 144 PAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQ-YFLGLEKGFGGSGNPAYPGGPFFNP-LGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVT 248 HSP 2 Score: 53.5286 bits (127), Expect = 2.771e-24 Identity = 29/79 (36.71%), Postives = 40/79 (50.63%), Query Frame = 2 Query: 65 LPTFDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI---RELPVWYEAGAV 274 L DG+L GD+GFDPLGL DPE RW E+++ RFAM G G + + L G+ W++ G + Sbjct: 65 LSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVI 142 HSP 3 Score: 25.0238 bits (53), Expect = 2.771e-24 Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 1 Query: 586 VGPIDNILEHLSDP 627 VGP N+L+H++DP Sbjct: 250 VGPYQNLLDHVADP 263
BLAST of CX300648 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 2.951e-19 Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 2 Query: 77 DGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA 271 DG+L GD+GFDPLGLG+DP L+WY +AEL+H R+AMA V GI +GI W+EAGA Sbjct: 72 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW--SGI----PWFEAGA 130 HSP 2 Score: 44.2838 bits (103), Expect = 2.951e-19 Identity = 34/104 (32.69%), Postives = 54/104 (51.92%), Query Frame = 3 Query: 300 TLFIVQLLLMGFAETKRYMDYISPGSQAKE------------GSFFGLEASLEGFRAWLPWR-SSAKPSLAWLKISEMLRDWKLKEIKNGRLAMVAMLGIFVQA 572 TL QL+LMG+ E+KR++D+ P SQ+ E +F G E G + + P + + ++ +E L K+ EIK+ RLAM+AML + +A Sbjct: 142 TLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTG-EQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEA 244
BLAST of CX300648 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 6.487e-19 Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 2 Query: 77 DGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA 271 DG+L GDFGFDPLGLG+DP L+WY +AEL+H R+AM V GI TGI W+EAGA Sbjct: 77 DGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAW--TGI----PWFEAGA 135 HSP 2 Score: 42.3578 bits (98), Expect = 6.487e-19 Identity = 37/107 (34.58%), Postives = 52/107 (48.60%), Query Frame = 3 Query: 300 TLFIVQLLLMGFAETKRYMDYISPGSQAKE--------GSFFGLEASLEGFRAWLPWRSSAKP-SLA-------WLKISEMLRDWKLKEIKNGRLAMVAMLGIFVQA 572 TL QLLLMG+ E+KR++D+ P SQ+ E F +G+ P P SLA + ++ L KL EIK+ RLAM+AML + +A Sbjct: 147 TLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGY----PGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEA 249
BLAST of CX300648 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.856e-18 Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 2 Query: 77 DGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA 271 DG+L GDFGFDPLGLG+DP L+WY +AEL+H R+AMA V GI +GI W+EAGA Sbjct: 72 DGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW--SGI----PWFEAGA 130 HSP 2 Score: 40.4318 bits (93), Expect = 1.856e-18 Identity = 33/103 (32.04%), Postives = 52/103 (50.49%), Query Frame = 3 Query: 300 TLFIVQLLLMGFAETKRYMDYISPGSQ-----------AKEGSFFGLEASLEGFRAWLPWR-SSAKPSLAWLKISEMLRDWKLKEIKNGRLAMVAMLGIFVQA 572 +L QLLLMG+ E+KR++D+ SQ A+ + F E G + + P + + ++ +E L KL EIK+ RLAM+AML + +A Sbjct: 142 SLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEA 244
BLAST of CX300648 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 56.9954 bits (136), Expect = 4.649e-16 Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 2 Query: 77 DGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 223 DG+ GDFGFD LGLGE P +L Y ++EL+H R+AM V GI+ + L Sbjct: 60 DGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL 108 HSP 2 Score: 36.965 bits (84), Expect = 4.649e-16 Identity = 26/92 (28.26%), Postives = 41/92 (44.57%), Query Frame = 3 Query: 300 TLFIVQLLLMGFAETKRYMDYISPGSQAKEGSFFGLEASLEGFRAWLPWRSSAKPSLAWLKISEMLRDWKLKEIKNGRLAMVAMLGIFVQAS 575 T+ ++ L + F E +R M+ S + G+F L + K + K+KEIKNGRLA++A++G VQ S Sbjct: 141 TILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAF---------------------DPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQS 211 HSP 3 Score: 30.8018 bits (68), Expect = 4.649e-16 Identity = 9/15 (60.00%), Postives = 13/15 (86.67%), Query Frame = 1 Query: 589 GPIDNILEHLSDPWH 633 GP++N+ HL+DPWH Sbjct: 217 GPLENLATHLADPWH 231 The following BLAST results are available for this feature:
BLAST of CX300648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300648 ID=CX300648; Name=CX300648; organism=Citrus clementina; type=EST; length=689bpback to top |