CX300659

Overview
NameCX300659
Unique NameCX300659
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300659_ssr18 microsatellite CX300659_ssr18:18..27. BLAST: Citrus ESTs to Prunus persica proteins V1
CX300659_ssr182 microsatellite CX300659_ssr182:182..193. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10350 contig Ccv1_Contig10350:53..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B_GOSHI (Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 5.611e-22
Identity = 58/91 (63.74%), Postives = 64/91 (70.33%), Query Frame = 2
Query:  173 SGDXXXXXXXXSIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            +GD        S+ETYK YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRL +   +       + +    L  PGELAKHAV
Sbjct:   45 AGDKKKKRVKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYN-KKPTITSREIQTAVRLVLPGELAKHAV 134          
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B3_SOLLC (Histone H2B.3 (Fragment) OS=Solanum lycopersicum GN=H2B-3 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.250e-21
Identity = 57/91 (62.64%), Postives = 64/91 (70.33%), Query Frame = 2
Query:  173 SGDXXXXXXXXSIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            +GD        ++ETYK YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRL +   +       + +    L  PGELAKHAV
Sbjct:   35 AGDKKKKRSKKAVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYN-KKPTITSREIQTAVRLVLPGELAKHAV 124          
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 102.834 bits (255), Expect = 1.633e-21
Identity = 57/90 (63.33%), Postives = 63/90 (70.00%), Query Frame = 2
Query:  176 GDXXXXXXXXSIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            GD        S+ETYK YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEAS+L +   +       + +    L  PGELAKHAV
Sbjct:   49 GDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYN-KKPTITSREIQTAVRLVLPGELAKHAV 137          
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B2_SOLLC (Histone H2B.2 OS=Solanum lycopersicum GN=H2B-2 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.785e-21
Identity = 55/80 (68.75%), Postives = 62/80 (77.50%), Query Frame = 2
Query:  206 SIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            SIETYK YIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQE+SRL ++  +       + +    L  PGELAKHAV
Sbjct:   49 SIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARIN-KKPTITSREIQTAVRLVLPGELAKHAV 127          
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B3_MEDTR (Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 3.637e-21
Identity = 56/91 (61.54%), Postives = 63/91 (69.23%), Query Frame = 2
Query:  173 SGDXXXXXXXXSIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            S D        S+ETYK YIFKVLKQVHPDIG+SSKAMGIMNSFINDIFEKLAQE+SRL +   +       + +    L  PGELAKHAV
Sbjct:   36 SSDKKKKRTKKSVETYKIYIFKVLKQVHPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYN-KKPTITSREIQTAVRLVLPGELAKHAV 125          
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B1_SOLLC (Histone H2B.1 OS=Solanum lycopersicum GN=H2B-1 PE=2 SV=4)

HSP 1 Score: 101.679 bits (252), Expect = 3.637e-21
Identity = 54/80 (67.50%), Postives = 62/80 (77.50%), Query Frame = 2
Query:  206 SIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            S+ETYK YIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQE+SRL ++  +       + +    L  PGELAKHAV
Sbjct:   51 SVETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARIN-KKPTITSREIQTAVRLVLPGELAKHAV 129          
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 3.637e-21
Identity = 56/91 (61.54%), Postives = 64/91 (70.33%), Query Frame = 2
Query:  173 SGDXXXXXXXXSIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            +G+        S+ETYK YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRL +   +       + +    L  PGELAKHAV
Sbjct:   46 AGEKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYN-KKPTITSREIQTAVRLVLPGELAKHAV 135          
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B1_ARATH (Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790 PE=1 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 6.204e-21
Identity = 55/91 (60.44%), Postives = 64/91 (70.33%), Query Frame = 2
Query:  173 SGDXXXXXXXXSIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            +GD        ++ETYK YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+L +   +       + +    L  PGELAKHAV
Sbjct:   46 AGDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYN-KKPTITSREIQTAVRLVLPGELAKHAV 135          
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B_CAPAN (Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 8.103e-21
Identity = 55/80 (68.75%), Postives = 61/80 (76.25%), Query Frame = 2
Query:  206 SIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            SIETYK YIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQE+SRL +   +       + +    L  PGELAKHAV
Sbjct:   54 SIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARYN-KKPTITSREIQTAVRLVLPGELAKHAV 132          
BLAST of CX300659 vs. ExPASy Swiss-Prot
Match: H2B7_ARATH (Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 1.382e-20
Identity = 55/90 (61.11%), Postives = 62/90 (68.89%), Query Frame = 2
Query:  176 GDXXXXXXXXSIETYKNYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLGKVQ*EADDYIFGKFRPL*DLYFPGELAKHAV 445
            GD        S+ETYK YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA E+S+L +   +       + +    L  PGELAKHAV
Sbjct:   44 GDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYN-KKPTITSREIQTAVRLVLPGELAKHAV 132          
The following BLAST results are available for this feature:
BLAST of CX300659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
H2B_GOSHI5.611e-2263.74Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV... [more]
H2B3_SOLLC1.250e-2162.64Histone H2B.3 (Fragment) OS=Solanum lycopersicum G... [more]
H2B11_ARATH1.633e-2163.33Histone H2B.11 OS=Arabidopsis thaliana GN=At5g5991... [more]
H2B2_SOLLC2.785e-2168.75Histone H2B.2 OS=Solanum lycopersicum GN=H2B-2 PE=... [more]
H2B3_MEDTR3.637e-2161.54Probable histone H2B.3 OS=Medicago truncatula PE=3... [more]
H2B1_SOLLC3.637e-2167.50Histone H2B.1 OS=Solanum lycopersicum GN=H2B-1 PE=... [more]
H2B1_MEDTR3.637e-2161.54Probable histone H2B.1 OS=Medicago truncatula PE=3... [more]
H2B1_ARATH6.204e-2160.44Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790... [more]
H2B_CAPAN8.103e-2168.75Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3[more]
H2B7_ARATH1.382e-2061.11Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030... [more]

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Properties
Property NameValue
Genbank descriptionC07012G06SK SaltLeaf1 Citrus clementina cDNA clone C07012G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300659 ID=CX300659; Name=CX300659; organism=Citrus clementina; type=EST; length=665bp
TCTACAAGCCTTGCCTTTCTCTCTCTCTACCAAACCGAAATTAATGGCAC
CAAAGGCGGAGAAGAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGAAGAAG
ACATCGGTGGCCGAGAAGGCGCCGGCAGAGAAGAAGCCGAAGGCCGGCAA
GAAGCTTCCCAAAGAAGCCGCCTCTGGCGACAAGAAGAAGAAGCGCGCGA
AGAAGAGCATCGAGACGTACAAGAATTACATCTTCAAAGTCCTGAAGCAG
GTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAACAG
TTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCTTG
GCAAGGTACAATAAGAAGCCGACGATTACATCTTCGGGAAATTCAGACCG
CTGTGAGACTTGTACTTTCCTGGTGAGCTGGCTAAGCACGCTGTTTTTTG
AGGGTACCAAAGCTGTTACTAAGTTTACTTTTTTCTTGAAGGAAGTTTGT
TGCATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTT
TAGGCCTTTAATTTTCTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCAA
ATCTTTGGTGGATTTTAGGGTTTGTTTGGATGTACTAGAATTTGGACCTG
TTCAGGTGATGTGCA
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