CX300660

Overview
NameCX300660
Unique NameCX300660
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length494
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300660 vs. ExPASy Swiss-Prot
Match: NDK2_SPIOL (Nucleoside diphosphate kinase 2, chloroplastic OS=Spinacia oleracea GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.303e-19
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 1
Query:  112 GSDSPENGKREKGLWFKEGELCQWTPAQAQWLRE 213
            GSDSP+NGKRE GLWFKEGE+CQWTPAQA WLRE
Sbjct:  200 GSDSPDNGKREIGLWFKEGEICQWTPAQAPWLRE 233          

HSP 2 Score: 42.3578 bits (98), Expect = 3.303e-19
Identity = 19/24 (79.17%), Postives = 20/24 (83.33%), Query Frame = 2
Query:   29 GSNGPSSAEPGTIRGDLAVQTGRN 100
            G+  P  AEPGTIRGDLAVQTGRN
Sbjct:  173 GATDPLQAEPGTIRGDLAVQTGRN 196          
BLAST of CX300660 vs. ExPASy Swiss-Prot
Match: NDK2_PEA (Nucleoside diphosphate kinase 2, chloroplastic OS=Pisum sativum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.202e-17
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 1
Query:  112 GSDSPENGKREKGLWFKEGELCQWTPAQAQWLRE 213
            GSDSPENG+RE  LWFKEGELC+WTP Q  WLRE
Sbjct:  197 GSDSPENGEREIALWFKEGELCEWTPVQEPWLRE 230          

HSP 2 Score: 40.817 bits (94), Expect = 8.202e-17
Identity = 18/24 (75.00%), Postives = 19/24 (79.17%), Query Frame = 2
Query:   29 GSNGPSSAEPGTIRGDLAVQTGRN 100
            G+  P  AEPGTIRGD AVQTGRN
Sbjct:  170 GATDPLQAEPGTIRGDFAVQTGRN 193          
BLAST of CX300660 vs. ExPASy Swiss-Prot
Match: NDK2_ARATH (Nucleoside diphosphate kinase II, chloroplastic OS=Arabidopsis thaliana GN=NDPK2 PE=1 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 8.202e-17
Identity = 28/34 (82.35%), Postives = 29/34 (85.29%), Query Frame = 1
Query:  112 GSDSPENGKREKGLWFKEGELCQWTPAQAQWLRE 213
            GSDSPENGKRE GLWFKEGELC+W  A A WLRE
Sbjct:  198 GSDSPENGKREIGLWFKEGELCKWDSALATWLRE 231          

HSP 2 Score: 41.9726 bits (97), Expect = 8.202e-17
Identity = 19/24 (79.17%), Postives = 19/24 (79.17%), Query Frame = 2
Query:   29 GSNGPSSAEPGTIRGDLAVQTGRN 100
            G   P  AEPGTIRGDLAVQTGRN
Sbjct:  171 GKTDPLQAEPGTIRGDLAVQTGRN 194          
BLAST of CX300660 vs. ExPASy Swiss-Prot
Match: NDK2_TOBAC (Nucleoside diphosphate kinase 2, chloroplastic OS=Nicotiana tabacum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.129e-15
Identity = 25/34 (73.53%), Postives = 26/34 (76.47%), Query Frame = 1
Query:  112 GSDSPENGKREKGLWFKEGELCQWTPAQAQWLRE 213
            GSDSP+NGKRE  LWF EGELC WTP Q  WL E
Sbjct:  199 GSDSPDNGKREIALWFGEGELCSWTPVQEPWLIE 232          

HSP 2 Score: 43.1282 bits (100), Expect = 1.129e-15
Identity = 19/24 (79.17%), Postives = 21/24 (87.50%), Query Frame = 2
Query:   29 GSNGPSSAEPGTIRGDLAVQTGRN 100
            G+  P +AEPGTIRGDLAVQTGRN
Sbjct:  172 GATNPLNAEPGTIRGDLAVQTGRN 195          
The following BLAST results are available for this feature:
BLAST of CX300660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
NDK2_SPIOL3.303e-1988.24Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK2_PEA8.202e-1779.41Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK2_ARATH8.202e-1782.35Nucleoside diphosphate kinase II, chloroplastic OS... [more]
NDK2_TOBAC1.129e-1573.53Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
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Properties
Property NameValue
Genbank descriptionC07012G07SK SaltLeaf1 Citrus clementina cDNA clone C07012G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300660 ID=CX300660; Name=CX300660; organism=Citrus clementina; type=EST; length=494bp
GTGTGGTGGCATCTGCACGTAAGTTACAGGGTCAAACGGACCCTCTTCAG
CTGAACCAGGCACAATAAGAGGGGATCTTGCTGTTCAAACTGGAAGGAAC
TGTGGTCCACTGGGAGTGACAGCCCTGAGAACGGCAAGCGTGAAAAAGGT
CTGTGGTTCAAAGAAGGTGAGTTGTGTCAGTGGACACCAGCTCAAGCACA
GTGGTTAAGGGAGTAATATTCATCAAACACTTAACTATGCGGCGGGCACA
CTTTTGAAGAGTTCTCTTCTGAGCGATTATATTGAAAAATCAGAAGAAAT
TTATTGATTTGTGATCCTAATAATTCAATGGTTAAACCGCTTGTTAGAAC
CGTTGTTTTGGGAGACAAAACATTTGGAAGTCTTGTTCTCTTAGTTTGTG
ATTGTGCGTCAAAATAATCGAAAAAGAAAAAAAAACAGTAATAATAAATG
TGATTATCTCAATAAACGTTCTTTATAAAAAAAAAAAAAAAAAA
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