CX300664

Overview
NameCX300664
Unique NameCX300664
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length476
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300664_ssr420 microsatellite CX300664_ssr420:420..429. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7625 contig Ccv1_Contig7625:838..1309. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX300664 vs. ExPASy Swiss-Prot
Match: PSBY_ARATH (Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana GN=PSBY PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.328e-12
Identity = 38/61 (62.30%), Postives = 43/61 (70.49%), Query Frame = 2 
Query:    2 ATGLMSMPPHXXXXXXXXXXXXXXXXDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRS 184
            A+GL++ PP                 DSRGQLLLIVVTPA+LWVLYNILQPALNQIN+MRS
Sbjct:  131 ASGLLTPPPEAYAAAEAAAASS----DSRGQLLLIVVTPALLWVLYNILQPALNQINKMRS 187
The following BLAST results are available for this feature:
BLAST of CX300664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PSBY_ARATH3.328e-1262.30Photosystem II core complex proteins psbY, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionC07012H02SK SaltLeaf1 Citrus clementina cDNA clone C07012H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300664 ID=CX300664; Name=CX300664; organism=Citrus clementina; type=EST; length=476bp
CGCAACAGGGCTGATGTCCATGCCGCCCCATGCATCGGCTGCGGCCAGTG
AAGTTGCCACGATTGCTGAAGCCGCTAGTGACAGCAGGGGTCAGCTTCTG
CTTATTGTTGTTACTCCTGCTATTCTCTGGGTGCTTTACAACATTTTGCA
GCCGGCTCTGAACCAAATCAACAGGATGAGGTCCGAGTGAGAGATTAATT
CTGTTGGAATAGGTGTAGTACAACGAATTTTTCTTGTAATTGCACCTCAT
GTTGTCAATGAACTTCCTTCTTTTTTTCTTTTTTTTTTGTGTATGTGCGT
GTGTCTTGGAACAATTTTCATTTAACCGGGTTGATTAAAGTGTAATTATG
GGGTCAGAAGTGAATATGTTATCAGCCGTGAAGCACTTACTGGTAGAATT
TTGATTGGTGTATTGTGTAATATATATATAGCCCAATGTAAATTATGAAC
TGTTGTTGTAAAAAAAAAAAAAAAAA
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