CX300668

Overview
NameCX300668
Unique NameCX300668
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length364
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300668 vs. ExPASy Swiss-Prot
Match: C98A3_ARATH (Cytochrome P450 98A3 OS=Arabidopsis thaliana GN=CYP98A3 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.714e-26
Identity = 45/65 (69.23%), Postives = 54/65 (83.08%), Query Frame = 3
Query:    3 HDYRLLPFGSGRRICPGIQLGINLVTSMLGHLLHHFWWAPAKGVKPEEIDMAGNPGQVIVHDHTP 197
            HD+RLLPFG+GRR+CPG QLGINLVTSM+ HLLHHF W P +G KPEEIDM+ NPG ++ +  TP
Sbjct:  424 HDFRLLPFGAGRRVCPGAQLGINLVTSMMSHLLHHFVWTPPQGTKPEEIDMSENPG-LVTYMRTP 487          

HSP 2 Score: 33.113 bits (74), Expect = 8.714e-26
Identity = 17/28 (60.71%), Postives = 20/28 (71.43%), Query Frame = 1
Query:  178 SYMTTPLEVVATPRLADHGLYKRVLVDM 261
            +YM TP++ VATPRL    LYKRV  DM
Sbjct:  482 TYMRTPVQAVATPRLPS-DLYKRVPYDM 508          
BLAST of CX300668 vs. ExPASy Swiss-Prot
Match: C98A2_SOYBN (Cytochrome P450 98A2 OS=Glycine max GN=CYP98A2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.476e-25
Identity = 46/65 (70.77%), Postives = 53/65 (81.54%), Query Frame = 3
Query:    3 HDYRLLPFGSGRRICPGIQLGINLVTSMLGHLLHHFWWAPAKGVKPEEIDMAGNPGQVIVHDHTP 197
            HD+RLLPFGSGRR+CPG QLGINL  SMLGHLLHHF W P +G+KPEEIDM  NPG ++ +  TP
Sbjct:  425 HDFRLLPFGSGRRVCPGAQLGINLAASMLGHLLHHFCWTPPEGMKPEEIDMGENPG-LVTYMRTP 488          

HSP 2 Score: 31.187 bits (69), Expect = 1.476e-25
Identity = 14/24 (58.33%), Postives = 18/24 (75.00%), Query Frame = 1
Query:  178 SYMTTPLEVVATPRLADHGLYKRV 249
            +YM TP++ V +PRL  H LYKRV
Sbjct:  483 TYMRTPIQAVVSPRLPSH-LYKRV 505          
BLAST of CX300668 vs. ExPASy Swiss-Prot
Match: C98A1_SORBI (Cytochrome P450 98A1 OS=Sorghum bicolor GN=CYP98A1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.249e-21
Identity = 36/57 (63.16%), Postives = 48/57 (84.21%), Query Frame = 3
Query:    6 DYRLLPFGSGRRICPGIQLGINLVTSMLGHLLHHFWWAPAKGVKPEEIDMAGNPGQV 176
            D+R+LPFG+GRR+CPG QLGINLV SM+GHLLHHF W+  +G +PE+++M  +PG V
Sbjct:  428 DFRVLPFGAGRRVCPGAQLGINLVASMIGHLLHHFEWSLPEGTRPEDVNMMESPGLV 484          

HSP 2 Score: 32.3426 bits (72), Expect = 4.249e-21
Identity = 15/28 (53.57%), Postives = 19/28 (67.86%), Query Frame = 1
Query:  178 SYMTTPLEVVATPRLADHGLYKRVLVDM 261
            ++M TPL+ VA PRL    LY RV V+M
Sbjct:  485 TFMGTPLQAVAKPRLEKEELYNRVPVEM 512          
The following BLAST results are available for this feature:
BLAST of CX300668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
C98A3_ARATH8.714e-2669.23Cytochrome P450 98A3 OS=Arabidopsis thaliana GN=CY... [more]
C98A2_SOYBN1.476e-2570.77Cytochrome P450 98A2 OS=Glycine max GN=CYP98A2 PE=... [more]
C98A1_SORBI4.249e-2163.16Cytochrome P450 98A1 OS=Sorghum bicolor GN=CYP98A1... [more]
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Properties
Property NameValue
Genbank descriptionC07012H07SK SaltLeaf1 Citrus clementina cDNA clone C07012H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300668 ID=CX300668; Name=CX300668; organism=Citrus clementina; type=EST; length=364bp
GACACGATTATCGATTGTTACCATTTGGTTCGGGGAGAAGAATTTGTCCC
GGCATACAACTTGGCATAAATTTAGTGACCTCGATGTTGGGTCATCTTTT
GCACCATTTTTGGTGGGCACCGGCTAAAGGAGTGAAGCCTGAGGAAATTG
ATATGGCCGGGAACCCTGGACAGGTCATCGTACATGACCACACCCCTTGA
GGTTGTGGCTACCCCGCGGTTGGCTGATCATGGCCTGTACAAACGTGTCC
TTGTGGACATGTGATTTAATTAAGTTTGTCGTGTGATAAAATATGGTTCC
TTGTTTTTTGGCATTTAATAAAAAAAAAAAAAAAAAAAAAAAAAACCTCG
GGGGGGGGCCCGGT
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