CX300670 | Citrus Genome Database

Overview


Name	CX300670
Unique Name	CX300670
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	483

Libraries


Library Name	Type
SaltLeaf1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of CX300670 vs. ExPASy Swiss-Prot
Match: RR5_ARATH (30S ribosomal protein S5, chloroplastic OS=Arabidopsis thaliana GN=rps5 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.911e-23
Identity = 31/42 (73.81%), Postives = 39/42 (92.86%), Query Frame = 2

Query:   95 LRTALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 220
            +  ALGKQLGSNNALNNARAT+ AVQ+M+Q+R+V++ERGIPM
Sbjct:  257 VENALGKQLGSNNALNNARATLAAVQQMRQFRDVAQERGIPM 298

HSP 2 Score: 60.077 bits (144), Expect = 4.911e-23
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 1

Query:    4 GRPKVMLRPASPGTGVTAGGAVRLVLETAGVENCFGE 114
            G  KVMLRPASPGTGV AGGAVR+VLE AGVEN  G+
Sbjct:  227 GAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGK 263

[Close]

BLAST of CX300670 vs. ExPASy Swiss-Prot
Match: RR5_SPIOL (30S ribosomal protein S5, chloroplastic OS=Spinacia oleracea GN=rps5 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.825e-22
Identity = 31/42 (73.81%), Postives = 38/42 (90.48%), Query Frame = 2

Query:   95 LRTALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 220
            +  ALGKQLGSNNALNNARAT+VAVQ M+Q+ +V+R+RGIPM
Sbjct:  262 VENALGKQLGSNNALNNARATIVAVQTMRQFSDVARDRGIPM 303

HSP 2 Score: 56.6102 bits (135), Expect = 6.825e-22
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 1

Query:    4 GRPKVMLRPASPGTGVTAGGAVRLVLETAGVENCFGE 114
            G  +VMLRPA+PGTGV AGGAVR VLE AGVEN  G+
Sbjct:  232 GAARVMLRPAAPGTGVIAGGAVRTVLEMAGVENALGK 268

[Close]

BLAST of CX300670 vs. ExPASy Swiss-Prot
Match: RS5_CYAA5 (30S ribosomal protein S5 OS=Cyanothece sp. (strain ATCC 51142) GN=rpsE PE=3 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 4.830e-15
Identity = 22/42 (52.38%), Postives = 33/42 (78.57%), Query Frame = 2

Query:   95 LRTALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 220
            L+  L KQLGSNN LNNARA + A++ ++ + EV++ERG+P+
Sbjct:  127 LKNILAKQLGSNNPLNNARAVINALEGLRTFSEVAQERGVPL 168

HSP 2 Score: 49.2914 bits (116), Expect = 4.830e-15
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 1

Query:    4 GRPKVMLRPASPGTGVTAGGAVRLVLETAGVEN 102
            G  KV++RPA+PGTGV AGGAVR VLE AG++N
Sbjct:   97 GGAKVIVRPAAPGTGVIAGGAVRTVLELAGLKN 129

[Close]

BLAST of CX300670 vs. ExPASy Swiss-Prot
Match: RS5_NOSP7 (30S ribosomal protein S5 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rpsE PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 1.060e-14
Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = 1

Query:    4 GRPKVMLRPASPGTGVTAGGAVRLVLETAGVEN 102
            G  KV++RPA+PGTGV AGGAVR VLE AGV N
Sbjct:   99 GGAKVIMRPAAPGTGVIAGGAVRTVLELAGVRN 131

HSP 2 Score: 48.521 bits (114), Expect = 1.060e-14
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 2

Query:   95 LRTALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 220
            +R  L KQLGSNN LNNARA V A+  ++   EV+ +RGIP+
Sbjct:  129 VRNVLAKQLGSNNPLNNARAAVNALSTLRTLSEVAEDRGIPI 170

[Close]

BLAST of CX300670 vs. ExPASy Swiss-Prot
Match: RS5_ACAM1 (30S ribosomal protein S5 OS=Acaryochloris marina (strain MBIC 11017) GN=rpsE PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 1.789e-14
Identity = 25/33 (75.76%), Postives = 27/33 (81.82%), Query Frame = 1

Query:    4 GRPKVMLRPASPGTGVTAGGAVRLVLETAGVEN 102
            G  KVM+RPA+PGTGV AGGAVR VLE AGV N
Sbjct:   99 GAAKVMMRPAAPGTGVIAGGAVRTVLELAGVRN 131

HSP 2 Score: 45.8246 bits (107), Expect = 1.789e-14
Identity = 22/40 (55.00%), Postives = 30/40 (75.00%), Query Frame = 2

Query:   95 LRTALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 214
            +R  L KQLGS+N LNNARAT+ A+  ++ + EV+ ERGI
Sbjct:  129 VRNVLAKQLGSDNPLNNARATLHALASLRTFSEVAGERGI 168

[Close]

BLAST of CX300670 vs. ExPASy Swiss-Prot
Match: RS5_CYAP8 (30S ribosomal protein S5 OS=Cyanothece sp. (strain PCC 8801) GN=rpsE PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 1.790e-14
Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 1

Query:    4 GRPKVMLRPASPGTGVTAGGAVRLVLETAGVEN 102
            G  KV++RPA+PGTGV AGGAVR VLE AGV+N
Sbjct:   97 GGAKVIVRPAAPGTGVIAGGAVRTVLELAGVKN 129

HSP 2 Score: 47.7506 bits (112), Expect = 1.790e-14
Identity = 20/42 (47.62%), Postives = 33/42 (78.57%), Query Frame = 2

Query:   95 LRTALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 220
            ++  L KQLGS+N LNNARA + A++ ++ + EV++ERG+P+
Sbjct:  127 VKNILAKQLGSSNPLNNARAVINALEGLRTFSEVAQERGVPL 168

[Close]

BLAST of CX300670 vs. ExPASy Swiss-Prot
Match: RS5_ANAVT (30S ribosomal protein S5 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpsE PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 3.023e-14
Identity = 25/33 (75.76%), Postives = 27/33 (81.82%), Query Frame = 1

Query:    4 GRPKVMLRPASPGTGVTAGGAVRLVLETAGVEN 102
            G  KVM+RPA+PGTGV AGGAVR VLE AGV N
Sbjct:   98 GGAKVMMRPAAPGTGVIAGGAVRTVLELAGVRN 130

HSP 2 Score: 45.4394 bits (106), Expect = 3.023e-14
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 2

Query:   95 LRTALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 214
            +R  L KQLGSNN LNNARA V A+  ++   EV+ +RGI
Sbjct:  128 VRNVLAKQLGSNNPLNNARAAVNALSTLRTLAEVAEDRGI 167

[Close]

BLAST of CX300670 vs. ExPASy Swiss-Prot
Match: RS5_ANASP (30S ribosomal protein S5 OS=Anabaena sp. (strain PCC 7120) GN=rpsE PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 3.023e-14
Identity = 25/33 (75.76%), Postives = 27/33 (81.82%), Query Frame = 1

Query:    4 GRPKVMLRPASPGTGVTAGGAVRLVLETAGVEN 102
            G  KVM+RPA+PGTGV AGGAVR VLE AGV N
Sbjct:   98 GGAKVMMRPAAPGTGVIAGGAVRTVLELAGVRN 130

HSP 2 Score: 45.4394 bits (106), Expect = 3.023e-14
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 2

Query:   95 LRTALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 214
            +R  L KQLGSNN LNNARA V A+  ++   EV+ +RGI
Sbjct:  128 VRNVLAKQLGSNNPLNNARAAVNALSTLRTLAEVAEDRGI 167

[Close]

BLAST of CX300670 vs. ExPASy Swiss-Prot
Match: RS5_SYNY3 (30S ribosomal protein S5 OS=Synechocystis sp. (strain PCC 6803) GN=rpsE PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 5.103e-14
Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 1

Query:    4 GRPKVMLRPASPGTGVTAGGAVRLVLETAGVEN 102
            G  KV++RPA+PGTGV AGGAVR VLE AGV+N
Sbjct:   97 GGAKVVVRPAAPGTGVIAGGAVRTVLELAGVKN 129

HSP 2 Score: 46.2098 bits (108), Expect = 5.103e-14
Identity = 20/40 (50.00%), Postives = 30/40 (75.00%), Query Frame = 2

Query:   95 LRTALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 214
            ++  L KQLGSNN LNNARA + A++ ++ + EV+ ERG+
Sbjct:  127 VKNILAKQLGSNNPLNNARAAINALETLRTFSEVAEERGV 166

[Close]

BLAST of CX300670 vs. ExPASy Swiss-Prot
Match: RS5_THEEB (30S ribosomal protein S5 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 1.119e-13
Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 1

Query:    4 GRPKVMLRPASPGTGVTAGGAVRLVLETAGVEN 102
            G  +VM+RPA+PGTGV AGG+VR VLE AGV N
Sbjct:   97 GAARVMIRPAAPGTGVIAGGSVRTVLELAGVRN 129

HSP 2 Score: 45.4394 bits (106), Expect = 1.119e-13
Identity = 21/42 (50.00%), Postives = 31/42 (73.81%), Query Frame = 2

Query:   95 LRTALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 220
            +R  L KQLGS+N LNNARA + A+  ++ ++EV+ ER IP+
Sbjct:  127 VRNVLAKQLGSSNPLNNARAALEALAALRTFQEVAEEREIPI 168

The following BLAST results are available for this feature:

BLAST of CX300670 vs. ExPASy Swiss-Prot

BLAST of CX300670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41


Match Name	E-value	Identity	Description
RR5_ARATH	4.911e-23	73.81	30S ribosomal protein S5, chloroplastic OS=Arabido...	[more]
RR5_SPIOL	6.825e-22	73.81	30S ribosomal protein S5, chloroplastic OS=Spinaci...	[more]
RS5_CYAA5	4.830e-15	52.38	30S ribosomal protein S5 OS=Cyanothece sp. (strain...	[more]
RS5_NOSP7	1.060e-14	72.73	30S ribosomal protein S5 OS=Nostoc punctiforme (st...	[more]
RS5_ACAM1	1.789e-14	75.76	30S ribosomal protein S5 OS=Acaryochloris marina (...	[more]
RS5_CYAP8	1.790e-14	72.73	30S ribosomal protein S5 OS=Cyanothece sp. (strain...	[more]
RS5_ANAVT	3.023e-14	75.76	30S ribosomal protein S5 OS=Anabaena variabilis (s...	[more]
RS5_ANASP	3.023e-14	75.76	30S ribosomal protein S5 OS=Anabaena sp. (strain P...	[more]
RS5_SYNY3	5.103e-14	72.73	30S ribosomal protein S5 OS=Synechocystis sp. (str...	[more]
RS5_THEEB	1.119e-13	69.70	30S ribosomal protein S5 OS=Thermosynechococcus el...	[more]

Pages

Properties


Property Name	Value
Genbank description	C07012H09SK SaltLeaf1 Citrus clementina cDNA clone C07012H09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX300670 ID=CX300670; Name=CX300670; organism=Citrus clementina; type=EST; length=483bp
TTGGGGCGGCCTAAGGTGATGCTCAGACCTGCTTCTCCTGGTACTGGAGT
GACTGCTGGAGGTGCTGTTAGACTTGTTCTTGAAACGGCAGGTGTTGAGA
ACTGCTTTGGGGAAGCAACTTGGGAGTAACAATGCCCTCAACAATGCTAG
AGCAACGGTTGTTGCAGTGCAGAAAATGAAGCAGTGGCGTGAAGTTTCTC
GTGAGCGCGGGATCCCAATGGAAGAATTATGGAAGTGATGGCTCTAGAAG
TGGCTTGAGTTCTTTGCCCTGTAGTGTAGATTCTGTAAAATGGTTTATGT
AATGCAACCCCAAATACAAACATCAGACATCTCTCTTGATTTTGTGGCTC
AAGCTGGTCTTCTAGTTTTATCCAATTTGTTTCCAGTTGGTACTACTTTT
AAGTTGCAACTTAAAATTTTCTTTCTAGTCATGATTTTATTTTAATTTAC
TTTTGGTGTTAATCCGTAAAAAAAAAAAAAAAA