CX300672

Overview
NameCX300672
Unique NameCX300672
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length354
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9703 contig Ccv1_Contig9703:52..405. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300672 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.599e-23
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1
Query:   46 MSDTCGICDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 243
            MSDTCG CDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CX300672 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.738e-18
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 1
Query:   55 TCGICDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCGS 246
            TCG CDC D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CX300672 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.883e-18
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 1
Query:   46 MSDTCGICDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 240
            MSD CG CDCAD SQCVKKG+S   D VETD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CX300672 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.330e-15
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   46 MSDTCGICDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 240
            MS  C  CDC+D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CX300672 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.330e-15
Identity = 38/66 (57.58%), Postives = 45/66 (68.18%), Query Frame = 1
Query:   46 MSDTCGICDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 243
            MS  C  CDCAD +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CX300672 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.053e-15
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   46 MSDTCGICDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 243
            MSD CG CDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CX300672 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.053e-15
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   46 MSDTCGICDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 243
            MSD CG CDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CX300672 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.067e-13
Identity = 32/66 (48.48%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   46 MSDTCGICDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 243
            MSD CG CDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of CX300672 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.067e-13
Identity = 32/66 (48.48%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   46 MSDTCGICDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 243
            MSD CG CDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of CX300672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA8.599e-2368.18Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC3.738e-1859.38Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE4.883e-1866.15Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV1.330e-1556.92Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO1.330e-1557.58Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ5.053e-1553.03Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI5.053e-1553.03Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ8.067e-1348.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI8.067e-1348.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionC07012H11SK SaltLeaf1 Citrus clementina cDNA clone C07012H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300672 ID=CX300672; Name=CX300672; organism=Citrus clementina; type=EST; length=354bp
CCCTCTATTTCCCTTTTTAAGTTCTATGTTCTAAGCTCAATCAACATGTC
GGACACCTGCGGCATCTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGA
AGGGAAGCAGCTATGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTC
AGCACCGTTGTTGTCATGGACGTTCAGGCTGCTGAGGCTGAAGGTAACTG
CAAGTGCGGCCCCACCTGCGCTTGTGTGAACTGCACTTGTGGTAGTCACT
AATAAGCAAACACATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAAA
TATTGTGGGGGTTAAGAATAATGTAAGGGTGATTAAAAAAAAAAAAAAAA
AAAA
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