CX302556

Overview
NameCX302556
Unique NameCX302556
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length656
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX302556 vs. ExPASy Swiss-Prot
Match: LIRP1_ORYSJ (Light-regulated protein OS=Oryza sativa subsp. japonica GN=LIR1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.531e-22
Identity = 54/114 (47.37%), Postives = 74/114 (64.91%), Query Frame = 1
Query:  139 AIYTPKLVGSSL---ASRRSAIKV---AATTSNDPSTFDYNSAFSVFPAEACEVIGGDACSAEMYPEAKLKPEAKNDTSTTASESIEREYLEYNDTNTVFKGEACDDLGGTFCE 462
            A+    + G SL   A RR A++V   AA  + + +  DY+S  SVFP EAC++IGG+AC+ +MYPEAKL   A    S  A+E ++R+YL Y++  TVF  EACDDLGG FC+
Sbjct:   13 AVLPAAVKGRSLQIQAPRRVALRVRAAAAAVAVEAAEVDYSSNISVFPMEACDLIGGEACNVQMYPEAKLSSSAAVAVSRAAAEEVDRDYLSYDEPTTVFPEEACDDLGGEFCK 126          
The following BLAST results are available for this feature:
BLAST of CX302556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LIRP1_ORYSJ5.531e-2247.37Light-regulated protein OS=Oryza sativa subsp. jap... [more]
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Properties
Property NameValue
Genbank descriptionC07011D09SK SaltLeaf1 Citrus clementina cDNA clone C07011D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX302556 ID=CX302556; Name=CX302556; organism=Citrus clementina; type=EST; length=656bp
CGNNNNNNNNNNNNNNNNNNNNNNNNACGCAAAACACACAACATAAACAC
AACACAAATATTTAAAATGCAGGCTGCTTTGAGCATTTCACCAACAACGC
TTGTCCCTTTAACAACCTCCAAGAACTTTTCCCAAGTGGCCATTTATACT
CCAAAGCTAGTAGGCAGCTCACTTGCTTCCAGACGCAGCGCAATCAAAGT
AGCTGCTACAACAAGCAATGACCCGTCCACATTTGATTACAATTCTGCCT
TCTCGGTGTTTCCAGCAGAGGCATGTGAGGTAATCGGTGGAGATGCGTGC
TCGGCAGAGATGTATCCTGAGGCGAAGTTGAAACCAGAGGCCAAGAACGA
CACATCAACAACTGCCTCAGAATCCATTGAGAGAGAGTATTTAGAGTACA
ACGATACAAACACGGTTTTCAAAGGAGAGGCTTGTGATGATCTTGGAGGA
ACGTTCTGTGAACGCGAGTACCAGAGAGGAGTCTACTAGAACTAGAAAGA
ACGTAATATCGGGAAACAACTATTTGATGCTTTTACTGTATATAGTTTAC
CCCAGTGAACTGGTGTGCATATGGTACAATTTCCTTTTTCTAAAATATTT
TTATTTGATGCTGAAAAAAATCAAAAATGCCTTTGTGCTAAAAAAAAAAA
AAAAAA
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