CX305091

Overview
NameCX305091
Unique NameCX305091
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length423
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2788 contig Ccv1_Contig2788:940..1362. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305091 vs. ExPASy Swiss-Prot
Match: CADH6_ARATH (Probable cinnamyl alcohol dehydrogenase 6 OS=Arabidopsis thaliana GN=CAD6 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.763e-12
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 3
Query:    3 GITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTLYATK 128
            GI A+IE+ISMDYVNTAM+RLAK DVRYRFVIDI+NTL AT+
Sbjct:  321 GIKAEIEIISMDYVNTAMDRLAKGDVRYRFVIDISNTLAATR 362          
BLAST of CX305091 vs. ExPASy Swiss-Prot
Match: CADH7_ARATH (Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis thaliana GN=CAD7 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.143e-11
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 3
Query:    6 ITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTLYAT 125
            ITADIE+IS DYVNTAMERLAKADV+YRFVID+ANT+  T
Sbjct:  317 ITADIELISADYVNTAMERLAKADVKYRFVIDVANTMKPT 356          
BLAST of CX305091 vs. ExPASy Swiss-Prot
Match: CADH5_ORYSJ (Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza sativa subsp. japonica GN=CAD5 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.143e-11
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 3
Query:    3 GITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 116
            G+TA+IEVI  DYVNTAMERLAKADVRYRFVIDI NTL
Sbjct:  312 GVTAEIEVIGADYVNTAMERLAKADVRYRFVIDIGNTL 349          
BLAST of CX305091 vs. ExPASy Swiss-Prot
Match: CADH3_ORYSJ (Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=CAD3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.493e-11
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 3
Query:    3 GITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTLYA 122
            G+TADIEVI  D VNTAMERLAKADVRYRFVID+ NTL+A
Sbjct:  323 GVTADIEVIGADDVNTAMERLAKADVRYRFVIDVGNTLHA 362          
BLAST of CX305091 vs. ExPASy Swiss-Prot
Match: MTDH_APIGR (Mannitol dehydrogenase OS=Apium graveolens GN=MTD PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.949e-11
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 3
Query:    6 ITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 116
            ITAD+EVI MDYVNTAMERL K+DVRYRFVIDIANT+
Sbjct:  321 ITADVEVIPMDYVNTAMERLVKSDVRYRFVIDIANTM 357          
BLAST of CX305091 vs. ExPASy Swiss-Prot
Match: CADH8_ARATH (Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis thaliana GN=CAD8 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.949e-11
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 3
Query:    6 ITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 116
            ITADIE+IS DYVNTAMERL KADVRYRFVID+ANTL
Sbjct:  317 ITADIELISADYVNTAMERLEKADVRYRFVIDVANTL 353          
BLAST of CX305091 vs. ExPASy Swiss-Prot
Match: MTDH_PETCR (Mannitol dehydrogenase (Fragment) OS=Petroselinum crispum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.408e-11
Identity = 30/37 (81.08%), Postives = 35/37 (94.59%), Query Frame = 3
Query:    6 ITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 116
            ITAD+EVI +DYVNTAMERL K+DVRYRFVID+ANT+
Sbjct:  298 ITADVEVIPVDYVNTAMERLVKSDVRYRFVIDVANTI 334          
BLAST of CX305091 vs. ExPASy Swiss-Prot
Match: MTDH_FRAAN (Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.408e-11
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 3
Query:    6 ITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 116
            ITADIEVI +DY+NTAMERL KADVRYRFVIDI NTL
Sbjct:  319 ITADIEVIPIDYLNTAMERLVKADVRYRFVIDIGNTL 355          
The following BLAST results are available for this feature:
BLAST of CX305091 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CADH6_ARATH1.763e-1280.95Probable cinnamyl alcohol dehydrogenase 6 OS=Arabi... [more]
CADH7_ARATH1.143e-1182.50Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis th... [more]
CADH5_ORYSJ1.143e-1186.84Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza... [more]
CADH3_ORYSJ1.493e-1182.50Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza... [more]
MTDH_APIGR1.949e-1186.49Mannitol dehydrogenase OS=Apium graveolens GN=MTD ... [more]
CADH8_ARATH1.949e-1189.19Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis th... [more]
MTDH_PETCR7.408e-1181.08Mannitol dehydrogenase (Fragment) OS=Petroselinum ... [more]
MTDH_FRAAN7.408e-1186.49Probable mannitol dehydrogenase OS=Fragaria ananas... [more]
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Properties
Property NameValue
Genbank descriptionC18001A01Rv Drought1 Citrus clementina cDNA clone C18001A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305091 ID=CX305091; Name=CX305091; organism=Citrus clementina; type=EST; length=423bp
GCGGTATAACAGCTGACATTGAGGTTATTTCGATGGATTATGTCAATACG
GCAATGGAGAGGCTTGCCAAGGCTGATGTTCGGTATCGATTTGTCATTGA
TATTGCAAACACCTTGTACGCCACCAAACCTTGAAGAATCAGAATCAGAT
TGATGTCTTCAATTCGCAACCTTGTTCCATGATCCACTTTGCTATATGTA
ATGCTCCCTCGATCATTACACTCTTTTAGCGCTTAAATTACTTTTAATTT
CCAGTTACATCGACCCTAATTATGTCGTGATTGCCGAAAAACTATAAATG
TTAATGAAATAAAACATTGTTCATATAAAATATTTAGCATATGTACCTTT
CACCAATTGTCCAGTCGAAATGTTTGTTTTTGTTCTAAATCACATATAGA
GTTTTGCTCTAAAAAAAAAAAAA
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