CX305121

Overview
NameCX305121
Unique NameCX305121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX305121_ssr227 microsatellite CX305121_ssr227:227..238. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL11_MEDSA (60S ribosomal protein L11 OS=Medicago sativa GN=RPL11 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.842e-56
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 3 
Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 545
            A+VLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK
Sbjct:   36 AKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 117

HSP 2 Score: 74.7146 bits (182), Expect = 1.842e-56
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:   82 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKV  +
Sbjct:    1 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQ 41
[Close]
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL112_ARATH (60S ribosomal protein L11-2 OS=Arabidopsis thaliana GN=RPL11B PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 5.790e-55
Identity = 79/82 (96.34%), Postives = 82/82 (100.00%), Query Frame = 3 
Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 545
            ++VLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK
Sbjct:   36 SKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 117

HSP 2 Score: 72.4034 bits (176), Expect = 5.790e-55
Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:   82 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            MASEKKLSNPMR+IKVQKLVLNISVGESGDRLTRA+KV  +
Sbjct:    1 MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQ 41
[Close]
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL111_ARATH (60S ribosomal protein L11-1 OS=Arabidopsis thaliana GN=RPL11A PE=1 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 5.790e-55
Identity = 79/82 (96.34%), Postives = 82/82 (100.00%), Query Frame = 3 
Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 545
            ++VLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK
Sbjct:   36 SKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 117

HSP 2 Score: 72.4034 bits (176), Expect = 5.790e-55
Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:   82 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            MASEKKLSNPMR+IKVQKLVLNISVGESGDRLTRA+KV  +
Sbjct:    1 MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQ 41
[Close]
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL11_ORYSJ (60S ribosomal protein L11 OS=Oryza sativa subsp. japonica GN=RPL11 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.070e-53
Identity = 77/82 (93.90%), Postives = 82/82 (100.00%), Query Frame = 3 
Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 545
            ++VLEQLSGQ+PVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIK
Sbjct:   36 SKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIK 117

HSP 2 Score: 71.2478 bits (173), Expect = 1.070e-53
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:   82 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            MASEKK SNPMREIKVQKLVLNISVGESGDRLTRA+KV  +
Sbjct:    1 MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQ 41
[Close]
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL11_ORYSI (60S ribosomal protein L11 OS=Oryza sativa subsp. indica GN=RPL11 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.070e-53
Identity = 77/82 (93.90%), Postives = 82/82 (100.00%), Query Frame = 3 
Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 545
            ++VLEQLSGQ+PVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIK
Sbjct:   36 SKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIK 117

HSP 2 Score: 71.2478 bits (173), Expect = 1.070e-53
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:   82 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            MASEKK SNPMREIKVQKLVLNISVGESGDRLTRA+KV  +
Sbjct:    1 MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQ 41
[Close]
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL11_NEUCR (60S ribosomal protein L11 OS=Neurospora crassa GN=rpl-11 PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 4.971e-44
Identity = 66/82 (80.49%), Postives = 75/82 (91.46%), Query Frame = 3 
Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 545
            A+VLEQLSGQTPV+SKARYTVR+FGIRRNEKI+ +VTVRG KA ++LE GLKVKEYEL +RNFS+TG FGFGI EHIDLGIK
Sbjct:   36 AKVLEQLSGQTPVYSKARYTVRTFGIRRNEKISVHVTVRGPKAEEILERGLKVKEYELRKRNFSETGNFGFGISEHIDLGIK 117

HSP 2 Score: 63.1586 bits (152), Expect = 4.971e-44
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:   82 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            M++E+K  NPMRE+++QKLVLNI VGESGDRLTRAAKV  +
Sbjct:    1 MSTEQKAQNPMRELRIQKLVLNICVGESGDRLTRAAKVLEQ 41
[Close]
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL11_SCHPO (60S ribosomal protein L11 OS=Schizosaccharomyces pombe GN=rpl11a PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.434e-43
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 3 
Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 545
            A+VLEQLSGQTPVFSKARYT+R FGIRRNEKIAC+VTVRG KA ++LE GLKVKEYEL +RNFS TG FGFGIQEHIDLGIK
Sbjct:   34 AKVLEQLSGQTPVFSKARYTIRRFGIRRNEKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIK 115

HSP 2 Score: 56.225 bits (134), Expect = 1.434e-43
Identity = 25/37 (67.57%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:   94 KKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            +K  NPM+E+++ KLVLNIS+GESGDRLTRAAKV  +
Sbjct:    3 EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQ 39
[Close]
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL11_CAEEL (60S ribosomal protein L11 OS=Caenorhabditis elegans GN=rpl-11.1 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.021e-42
Identity = 66/82 (80.49%), Postives = 74/82 (90.24%), Query Frame = 3 
Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 545
            A+VLEQL+GQTPVFSKARYTVR+FGIRRNEKIA + TVRG KA ++LE GLKVKEYEL + NFSDTG FGFG+QEHIDLGIK
Sbjct:   44 AKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIK 125

HSP 2 Score: 56.225 bits (134), Expect = 2.021e-42
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   91 EKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            EKK  N MRE+K+QKL LNI VGESGDRLTRAAKV  +
Sbjct:   12 EKKGRNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQ 49
[Close]
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL11_ASHGO (60S ribosomal protein L11 OS=Ashbya gossypii GN=RPL11 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.192e-41
Identity = 63/82 (76.83%), Postives = 74/82 (90.24%), Query Frame = 3 
Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 545
            ++VLEQLSGQTPV SKARYTVR+FGIRRNEKIA +VT+RG K+ ++LE GLKVKEY+L  +NFS+TG FGFGIQEHIDLGIK
Sbjct:   34 SKVLEQLSGQTPVHSKARYTVRTFGIRRNEKIAVHVTIRGPKSEEILERGLKVKEYQLRTKNFSETGNFGFGIQEHIDLGIK 115

HSP 2 Score: 58.9214 bits (141), Expect = 2.192e-41
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   97 KLSNPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            K  NPMRE+K++KLVLNISVGESGDRLTRA+KV  +
Sbjct:    4 KAQNPMRELKIEKLVLNISVGESGDRLTRASKVLEQ 39
[Close]
BLAST of CX305121 vs. ExPASy Swiss-Prot
Match: RL11_RAT (60S ribosomal protein L11 OS=Rattus norvegicus GN=Rpl11 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.856e-41
Identity = 67/82 (81.71%), Postives = 74/82 (90.24%), Query Frame = 3 
Query:  300 AQVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 545
            A+VLEQL+GQTPVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIK
Sbjct:   37 AKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIK 118

HSP 2 Score: 53.1434 bits (126), Expect = 2.856e-41
Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:  106 NPMREIKVQKLVLNISVGESGDRLTRAAKVFNE 204
            NPMRE++++KL LNI VGESGDRLTRAAKV  +
Sbjct:   10 NPMRELRIRKLCLNICVGESGDRLTRAAKVLEQ 42
The following BLAST results are available for this feature:
BLAST of CX305121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
RL11_MEDSA1.842e-5698.7860S ribosomal protein L11 OS=Medicago sativa GN=RP... [more]
RL112_ARATH5.790e-5596.3460S ribosomal protein L11-2 OS=Arabidopsis thalian... [more]
RL111_ARATH5.790e-5596.3460S ribosomal protein L11-1 OS=Arabidopsis thalian... [more]
RL11_ORYSJ1.070e-5393.9060S ribosomal protein L11 OS=Oryza sativa subsp. j... [more]
RL11_ORYSI1.070e-5393.9060S ribosomal protein L11 OS=Oryza sativa subsp. i... [more]
RL11_NEUCR4.971e-4480.4960S ribosomal protein L11 OS=Neurospora crassa GN=... [more]
RL11_SCHPO1.434e-4384.1560S ribosomal protein L11 OS=Schizosaccharomyces p... [more]
RL11_CAEEL2.021e-4280.4960S ribosomal protein L11 OS=Caenorhabditis elegan... [more]
RL11_ASHGO2.192e-4176.8360S ribosomal protein L11 OS=Ashbya gossypii GN=RP... [more]
RL11_RAT2.856e-4181.7160S ribosomal protein L11 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC18001D01Rv Drought1 Citrus clementina cDNA clone C18001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305121 ID=CX305121; Name=CX305121; organism=Citrus clementina; type=EST; length=547bp
GCGGGGACTCTTACATATTAGGGTTTGTTCCGTCTCCGTCTTCACTGAGC
AGCGGCAGTAACTCATCATCAGCAAACCCGAATGGCTTCAGAGAAGAAAC
TTTCGAACCCCATGAGGGAAATTAAGGTTCAGAAGCTTGTGCTCAACATC
TCCGTTGGTGAAAGTGGAGATCGTCTCACCAGAGCCGCTAAGGTCTTCAA
TGAATACCCTGTTTCTTTCTTTTTATTTTATTTATTTAAATGATTAAAGT
TAAAGCTTTTTATGTGTATTTAGTTAACTTTCATGTTTATTTATACAATG
CGCAGGTGCTGGAGCAACTCAGTGGACAGACACCTGTTTTCTCCAAGGCC
AGGTACACTGTTCGGTCTTTTGGGATCAGACGTAATGAGAAGATTGCATG
CTATGTGACTGTTAGAGGTGACAAGGCAATGCAGCTTTTGGAGAGTGGAT
TGAAGGTGAAGGAATATGAGCTTCTGCGTCGGAATTTCAGTGACACTGGC
TGTTTTGGCTTTGGTATTCAAGAGCATATTGATCTTGGAATCAAGTA
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