CX305131

Overview
NameCX305131
Unique NameCX305131
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length473
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10111 contig Ccv1_Contig10111:774..1246. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX305131 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.855e-13
Identity = 45/144 (31.25%), Postives = 76/144 (52.78%), Query Frame = 2 
Query:   44 MKTLLATILSFLILALASCPLLVLGTSSVPEPLLDVNGNKVESTLQYHIVSAIWXXXXXXXXXXXXXXXYCPLDVIQLPSAIQWGKKLILSPYDNST-IVRESTDLNLRFVG*LSGSKQCNELPLWKVDNYDASLGRWFITTGG 472
            MKT  A +L  L+ A  S        ++   P+LD +G+++++ +QY+++S+I                 CP  V+Q  S +  G  +I S  D+   +VR STD+N+ FV      + C+   +W++DNYD S G+W++TT G
Sbjct:    1 MKTATAVVL--LLFAFTSKSYFFGVANAANSPVLDTDGDELQTGVQYYVLSSISGAGGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVP--IRDRLCSTSTVWRLDNYDNSAGKWWVTTDG 140
The following BLAST results are available for this feature:
BLAST of CX305131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ASP_THECC3.855e-1331.2521 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
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Properties
Property NameValue
Genbank descriptionC18001E04Rv Drought1 Citrus clementina cDNA clone C18001E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305131 ID=CX305131; Name=CX305131; organism=Citrus clementina; type=EST; length=473bp
GCGGGGACGCATCAAACAGATATCATAGCTTTGAAATAACAAAATGAAGA
CTTTATTAGCAACAATACTCTCCTTCCTCATCCTTGCCTTGGCCTCATGC
CCTCTATTGGTCTTGGGCACCTCATCAGTTCCTGAACCTCTCCTTGATGT
CAATGGCAACAAGGTTGAATCCACTCTTCAGTACCATATAGTCTCAGCCA
TCTGGGGAGCTGGCGGCGGTGGAGTTAGCCTACACGGAGGCAGAAACGGA
TACTGTCCGTTGGATGTTATCCAATTACCTTCTGCTATCCAATGGGGAAA
GAAATTAATACTGTCACCATATGACAATTCTACAATTGTCAGAGAATCCA
CTGATCTCAACTTGAGATTCGTAGGGTGACTATCTGGAAGTAAGCAATGT
AACGAGCTACCGCTGTGGAAAGTTGATAACTATGACGCTTCATTAGGCAG
ATGGTTTATAACAACCGGGGGAC
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