CX305137

Overview
NameCX305137
Unique NameCX305137
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length423
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305137 vs. ExPASy Swiss-Prot
Match: FTSH6_ARATH (Cell division protease ftsH homolog 6, chloroplastic OS=Arabidopsis thaliana GN=FTSH6 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.302e-35
Identity = 76/112 (67.86%), Postives = 91/112 (81.25%), Query Frame = -2
Query:   93 TRYGMSEIGPWTLIDLSVQSSDVVMRMLARNSMSKKLAGDIDKTVRNIIESAYEVAKNHIRNNREAIDKLVDVLMEKETLSGDEFRAVLSEFTD--VSADQVDRTPIRELIS 422
            T +GMSEIGPW L D +V+ +DVV+RMLARNSMS+KLA DID  V+ II  AYEVAK H+RNNREAIDKLVDVL+EKETL+GDEFRA+LSE+TD  ++ D   R  I +LIS
Sbjct:  576 TMFGMSEIGPWALTDPAVKQNDVVLRMLARNSMSEKLAEDIDSCVKKIIGDAYEVAKKHVRNNREAIDKLVDVLLEKETLTGDEFRAILSEYTDQPLNTDGDVRIRINDLIS 687          
BLAST of CX305137 vs. ExPASy Swiss-Prot
Match: FTSH2_ARATH (Cell division protease ftsH homolog 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.829e-32
Identity = 64/95 (67.37%), Postives = 84/95 (88.42%), Query Frame = -2
Query:  138 TRYGMSEIGPWTLIDLSVQSSDVVMRMLARNSMSKKLAGDIDKTVRNIIESAYEVAKNHIRNNREAIDKLVDVLMEKETLSGDEFRAVLSEFTDV 422
            T +GMS+IGPW+L+D S QS DV+MRM+ARNSMS+KLA DID  V+ + +SAYE+A +HI+NNREA+DKLV+VL+EKET+ GDEFRA+LSEFT++
Sbjct:  579 TTFGMSDIGPWSLMDSSAQS-DVIMRMMARNSMSEKLAEDIDSAVKKLSDSAYEIALSHIKNNREAMDKLVEVLLEKETIGGDEFRAILSEFTEI 672          
BLAST of CX305137 vs. ExPASy Swiss-Prot
Match: FTSH6_ORYSJ (Cell division protease ftsH homolog 6, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH6 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.696e-31
Identity = 64/99 (64.65%), Postives = 79/99 (79.80%), Query Frame = -2
Query:  126 TRYGMSEIGPWTLIDLSVQSSDVVMRMLARNSMSKKLAGDIDKTVRNIIESAYEVAKNHIRNNREAIDKLVDVLMEKETLSGDEFRAVLSEFTDVSADQ 422
            T +GMSEIGPW L + + Q  DVV+RMLAR+SMS++LA DID  VR I++ AYEVAK H+R NR AID+LVDVLMEKETL GDEFRA+LSE  D+  ++
Sbjct:  575 TAFGMSEIGPWALAEPAAQGGDVVLRMLARSSMSERLAADIDAAVRTIVDEAYEVAKAHVRRNRAAIDQLVDVLMEKETLGGDEFRAILSEHVDIGKER 673          
BLAST of CX305137 vs. ExPASy Swiss-Prot
Match: FTSH8_ARATH (Cell division protease ftsH homolog 8, chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.893e-31
Identity = 63/95 (66.32%), Postives = 83/95 (87.37%), Query Frame = -2
Query:  138 TRYGMSEIGPWTLIDLSVQSSDVVMRMLARNSMSKKLAGDIDKTVRNIIESAYEVAKNHIRNNREAIDKLVDVLMEKETLSGDEFRAVLSEFTDV 422
            T +GMSEIGPW+L+D S QS DV+MRM+ARNSMS+KLA DID  V+ + + AYE+A + IRNNREA+DK+V++L+EKET+SGDEFRA+LSEFT++
Sbjct:  572 TTFGMSEIGPWSLMDSSEQS-DVIMRMMARNSMSEKLANDIDTAVKTLSDKAYEIALSQIRNNREAMDKIVEILLEKETMSGDEFRAILSEFTEI 665          
BLAST of CX305137 vs. ExPASy Swiss-Prot
Match: FTSH2_ORYSJ (Cell division protease ftsH homolog 2, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH2 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.893e-31
Identity = 61/96 (63.54%), Postives = 82/96 (85.42%), Query Frame = -2
Query:  129 YGMSEIGPWTLIDLSVQSSDVVMRMLARNSMSKKLAGDIDKTVRNIIESAYEVAKNHIRNNREAIDKLVDVLMEKETLSGDEFRAVLSEFTDVSAD 416
            +GMS+IGPW+L+D   QS DV+MRM+ARNSMS+KLA DID  V+ + + AYE+A + IR+NREA+DK+V+VL+EKETLSGDEFRA+LSEFT++  +
Sbjct:  568 FGMSDIGPWSLMDSGAQSGDVIMRMMARNSMSEKLAEDIDTAVKRLSDEAYEIALSQIRSNREAMDKIVEVLLEKETLSGDEFRAILSEFTEIPVE 663          
BLAST of CX305137 vs. ExPASy Swiss-Prot
Match: FTSH_PORPU (Cell division protease ftsH homolog OS=Porphyra purpurea GN=ftsH PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.460e-14
Identity = 41/97 (42.27%), Postives = 64/97 (65.98%), Query Frame = -2
Query:  138 TRYGMSEIGPWTLIDLSVQSSDVVMR--MLARNSMSKKLAGDIDKTVRNIIESAYEVAKNHIRNNREAIDKLVDVLMEKETLSGDEFRAVLSEFTDV 422
            TR+GMS+IGP   + L  Q SD  +   M   +  S ++A +IDK VR I+   Y+ AK  +++NR  +D+LVD+L+EKET+ G+EFR ++ E+T +
Sbjct:  525 TRFGMSKIGP---LSLESQGSDPFLGRGMGGGSEYSDEVATNIDKQVREIVSECYKEAKKIVKDNRVVMDRLVDLLIEKETIEGNEFRHIVKEYTAI 618          
BLAST of CX305137 vs. ExPASy Swiss-Prot
Match: FSTH_PORYE (Cell division protease ftsH homolog OS=Porphyra yezoensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.221e-13
Identity = 42/97 (43.30%), Postives = 62/97 (63.92%), Query Frame = -2
Query:  138 TRYGMSEIGPWTLIDLSVQSSDVVMR--MLARNSMSKKLAGDIDKTVRNIIESAYEVAKNHIRNNREAIDKLVDVLMEKETLSGDEFRAVLSEFTDV 422
            TR+GMS+IGP   + L  Q  D  +   M   +  S ++A +IDK VR I+   Y  AK+ I +NR  ID+LVD+L+EKET+ G+EFR ++ E+T +
Sbjct:  525 TRFGMSKIGP---LSLESQGGDPFLGRGMGGGSEYSDEVATNIDKQVREIVSECYAQAKHIIIDNRVVIDRLVDLLIEKETIEGNEFRDIVKEYTAI 618          
BLAST of CX305137 vs. ExPASy Swiss-Prot
Match: FTSH_GUITH (Cell division protease ftsH homolog OS=Guillardia theta GN=ftsH PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.083e-13
Identity = 42/97 (43.30%), Postives = 61/97 (62.89%), Query Frame = -2
Query:  138 TRYGMSEIGPWTLIDLSVQSSDVVM--RMLARNSMSKKLAGDIDKTVRNIIESAYEVAKNHIRNNREAIDKLVDVLMEKETLSGDEFRAVLSEFTDV 422
            TR+GMS IGP   + L  Q+SD  +   M + +  S+ +A  ID  VR II+  +      I++NR  IDKLVD+L+EKET+ GDEFR ++ +FT +
Sbjct:  525 TRFGMSNIGP---LSLESQNSDPFLGRTMGSSSQYSEDIASRIDMQVRAIIQHCHTETVQIIKDNRVVIDKLVDLLIEKETIDGDEFRQIVGDFTSL 618          
BLAST of CX305137 vs. ExPASy Swiss-Prot
Match: FTSH1_SYNY3 (Cell division protease ftsH homolog 1 OS=Synechocystis sp. (strain PCC 6803) GN=slr0228 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.083e-13
Identity = 36/97 (37.11%), Postives = 64/97 (65.98%), Query Frame = -2
Query:  138 TRYGMSEIGPWTLIDLSVQSSDVVMR--MLARNSMSKKLAGDIDKTVRNIIESAYEVAKNHIRNNREAIDKLVDVLMEKETLSGDEFRAVLSEFTDV 422
            TR+GMS +GP   I L     +V +   ++ R+  S+++A  ID  VR + E  +++A+  ++  RE +D+LVD+L+EKET+ G+EFR +++E+ +V
Sbjct:  524 TRFGMSNLGP---ISLESSGGEVFLGGGLMNRSEYSEEVATRIDAQVRQLAEQGHQMARKIVQEQREVVDRLVDLLIEKETIDGEEFRQIVAEYAEV 617          
BLAST of CX305137 vs. ExPASy Swiss-Prot
Match: FTSH_ODOSI (Cell division protease ftsH homolog OS=Odontella sinensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.928e-12
Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = -2
Query:  144 TRYGMSEIGPWTLIDLSVQSSDVVMRMLARNSMSKKLAGDIDKTVRNIIESAYEVAKNHIRNNREAIDKLVDVLMEKETLSGDEFRAVLSEFT 422
            TR+GMS IGP  L D S     +   M + +  ++ +A  ID  VR II   YE A   + +NR  ID +V+ L++KET+ GDEFR +LS +T
Sbjct:  538 TRFGMSNIGPLALEDESTGQVFLGGNMASGSEYAENIADRIDDEVRKIITYCYEKAIEIVLDNRVVIDLIVEKLLDKETMDGDEFRELLSTYT 630          
The following BLAST results are available for this feature:
BLAST of CX305137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
FTSH6_ARATH3.302e-3567.86Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH2_ARATH5.829e-3267.37Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH6_ORYSJ1.696e-3164.65Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH8_ARATH2.893e-3166.32Cell division protease ftsH homolog 8, chloroplast... [more]
FTSH2_ORYSJ2.893e-3163.54Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH_PORPU2.460e-1442.27Cell division protease ftsH homolog OS=Porphyra pu... [more]
FSTH_PORYE1.221e-1343.30Cell division protease ftsH homolog OS=Porphyra ye... [more]
FTSH_GUITH2.083e-1343.30Cell division protease ftsH homolog OS=Guillardia ... [more]
FTSH1_SYNY32.083e-1337.11Cell division protease ftsH homolog 1 OS=Synechocy... [more]
FTSH_ODOSI3.928e-1241.94Cell division protease ftsH homolog OS=Odontella s... [more]
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Properties
Property NameValue
Genbank descriptionC18001F01Rv Drought1 Citrus clementina cDNA clone C18001F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305137 ID=CX305137; Name=CX305137; organism=Citrus clementina; type=EST; length=423bp
TTTTTTTTTTTTTTTTTTTTTTTTACTAAATTTTGTGTACTGCAGCATGA
CTACAAAGTAAGGGTACAATCTATTAATGACACTCTTTAGGCGCTAATCA
ACTCTCGGATAGGAGTTCTATCAACTTGATCTGCAGATACATCAGTAAAT
TCTGATAGAACCGCCCTGAATTCATCTCCTGAAAGTGTTTCCTTCTCCAT
AAGCACATCCACAAGCTTATCAATGGCTTCCCTGTTATTCCTTATGTGAT
TCTTTGCAACCTCGTAAGCACTTTCAATTATATTTCTCACTGTTTTATCA
ATGTCGCCTGCAAGTTTTTTTGACATTGAGTTTCTTGCTAACATCCTCAT
CACGACATCACTGCTTTGCACTGAAAGATCAATCAGTGTCCATGGCCCAA
TTTCGGACATGCCATACCTTGTT
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