CX305142

Overview
NameCX305142
Unique NameCX305142
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length353
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig851 contig Ccv1_Contig851:1..353. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305142 vs. ExPASy Swiss-Prot
Match: WIN1_SOLTU (Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 6.775e-52
Identity = 87/107 (81.31%), Postives = 98/107 (91.59%), Query Frame = -2
Query:   32 ERIGWNLNAASAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNCGD 352
            + +GW+LNA SAYCSTWDANKPL+WR+KYGWTAFCGPVGPRG+ +CGKCLRVTN  TGAQ TVRIVDQCSNGGLDLDV VFR++DTDG GN QGHL+VNYQFV+CGD
Sbjct:   93 QNVGWDLNAVSAYCSTWDANKPLSWRKKYGWTAFCGPVGPRGRDSCGKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDVNVFRQIDTDGNGNHQGHLIVNYQFVDCGD 199          
BLAST of CX305142 vs. ExPASy Swiss-Prot
Match: WIN2_SOLTU (Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 3.363e-51
Identity = 86/107 (80.37%), Postives = 96/107 (89.72%), Query Frame = -2
Query:   32 ERIGWNLNAASAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNCGD 352
            + +GW+LNA SAYCSTWDANKP AWR KYGWTAFCGPVGPRG+ +CGKCLRVTN  TGAQ TVRIVDQCSNGGLDLD+ VF+++DTDG GN QGHL+VNYQFVNCGD
Sbjct:   92 QNVGWDLNAVSAYCSTWDANKPYAWRSKYGWTAFCGPVGPRGRDSCGKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDINVFQQIDTDGVGNQQGHLIVNYQFVNCGD 198          
BLAST of CX305142 vs. ExPASy Swiss-Prot
Match: HEVE_HEVBR (Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 5.369e-49
Identity = 84/104 (80.77%), Postives = 93/104 (89.42%), Query Frame = -2
Query:   32 GWNLNAASAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNCGD 343
            GW+LNAASAYCSTWDANKP +WR KYGWTAFCGPVG  GQ++CGKCL VTN GTGA+ TVRIVDQCSNGGLDLDV VFR+LDTDGKG  +GH+ VNYQFV+CGD
Sbjct:   86 GWDLNAASAYCSTWDANKPYSWRSKYGWTAFCGPVGAHGQSSCGKCLSVTNTGTGAKTTVRIVDQCSNGGLDLDVNVFRQLDTDGKGYERGHITVNYQFVDCGD 189          
BLAST of CX305142 vs. ExPASy Swiss-Prot
Match: PR4B_TOBAC (Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 4.545e-48
Identity = 82/107 (76.64%), Postives = 94/107 (87.85%), Query Frame = -2
Query:   32 ERIGWNLNAASAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNCGD 352
            + I W+L AASA+C+TWDA+KPLAWR+KYGWTAFCGP GPRGQ +CG+CLRVTN GTG QATVRIVDQCSNGGLDLDV VF +LDT+G G  QGHL+VNY+FVNC D
Sbjct:   41 QNINWDLRAASAFCATWDADKPLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQATVRIVDQCSNGGLDLDVNVFNQLDTNGLGYQQGHLIVNYEFVNCND 147          
BLAST of CX305142 vs. ExPASy Swiss-Prot
Match: PR4A_TOBAC (Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.256e-47
Identity = 81/107 (75.70%), Postives = 92/107 (85.98%), Query Frame = -2
Query:   32 ERIGWNLNAASAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNCGD 352
            + I W+L AASA+C+TWDA+KPLAWR+KYGWTAFCGP GPRGQ +CG+CLRVTN GTG Q TVRIVDQCSNGGLDLDV VF +LDT+G G  QGHL VNY+FVNC D
Sbjct:   41 QNINWDLRAASAFCATWDADKPLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQTTVRIVDQCSNGGLDLDVNVFNQLDTNGVGYQQGHLTVNYEFVNCND 147          
BLAST of CX305142 vs. ExPASy Swiss-Prot
Match: PR4_PRUPE (Pathogenesis-related protein PR-4 (Fragment) OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 6.563e-47
Identity = 79/107 (73.83%), Postives = 93/107 (86.92%), Query Frame = -2
Query:   32 ERIGWNLNAASAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNCGD 352
            + I W+L  AS +C+TWDA+KPL+WR KYGWTAFCGPVGP GQ +CGKCL VTN GTGA+ TVRIVDQCSNGGLDLDV VF ++DT+G+GNAQGHL+VNY FV+CGD
Sbjct:    1 QNINWDLRTASVFCATWDADKPLSWRSKYGWTAFCGPVGPTGQDSCGKCLLVTNTGTGAKVTVRIVDQCSNGGLDLDVNVFNQIDTNGQGNAQGHLIVNYDFVDCGD 107          
BLAST of CX305142 vs. ExPASy Swiss-Prot
Match: HEVL_ARATH (Hevein-like protein OS=Arabidopsis thaliana GN=HEL PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 3.981e-44
Identity = 77/103 (74.76%), Postives = 87/103 (84.47%), Query Frame = -2
Query:   32 WNLNAASAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNCGD 340
            W+L A SAYCSTWDA+KP AWR KYGWTAFCGP GPRGQA+CGKCLRV N  T A  TVRIVDQCSNGGLDLDV +F ++DTDG G  QGHL+V+YQFV+CG+
Sbjct:   91 WDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPRGQASCGKCLRVKNTRTNAAVTVRIVDQCSNGGLDLDVAMFNQIDTDGFGYQQGHLIVDYQFVDCGN 193          
BLAST of CX305142 vs. ExPASy Swiss-Prot
Match: PRP2_SOLLC (Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 8.870e-44
Identity = 75/105 (71.43%), Postives = 87/105 (82.86%), Query Frame = -2
Query:   38 ERIGWNLNAASAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNC 352
            + I W+L  AS YC+TWDA+KPL WRR+YGWTAFCGP GP GQA+CG+CLRVTN GTG Q TVRIVDQC NGGLDLDV VF +LDT+G G  +G+L VNY+FVNC
Sbjct:   39 QNINWDLRTASVYCATWDADKPLEWRRRYGWTAFCGPAGPTGQASCGRCLRVTNTGTGTQETVRIVDQCRNGGLDLDVNVFNRLDTNGLGYQRGNLNVNYEFVNC 143          
BLAST of CX305142 vs. ExPASy Swiss-Prot
Match: BARW_HORVU (Barwin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 8.302e-42
Identity = 79/106 (74.53%), Postives = 87/106 (82.08%), Query Frame = -2
Query:   32 WNLNA--ASAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVG-VFRKLDTDGKGNAQGHLMVNYQFVNCGD 340
            W+L A   SAYC+TWDA+KPL+WR KYGWTAFCGP GPRGQAACGKCLRVTN  TGAQ T RIVDQC+NGGLDLD   VF K+DT+G G  QGHL VNYQFV+C D
Sbjct:   20 WDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 125          
BLAST of CX305142 vs. ExPASy Swiss-Prot
Match: WHW2_WHEAT (Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.671e-40
Identity = 77/106 (72.64%), Postives = 85/106 (80.19%), Query Frame = -2
Query:   32 WNLNA--ASAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVG-VFRKLDTDGKGNAQGHLMVNYQFVNCGD 340
            W+L A   SAYC+TWDA+KPL+WR KYGWTAFCGP G  GQAACGKCLRVTN  TGAQ T RIVDQC+NGGLDLD   VF K+DT+G G  QGHL VNYQFV+C D
Sbjct:   43 WDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGAHGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 148          
The following BLAST results are available for this feature:
BLAST of CX305142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
WIN1_SOLTU6.775e-5281.31Wound-induced protein WIN1 OS=Solanum tuberosum GN... [more]
WIN2_SOLTU3.363e-5180.37Wound-induced protein WIN2 OS=Solanum tuberosum GN... [more]
HEVE_HEVBR5.369e-4980.77Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2[more]
PR4B_TOBAC4.545e-4876.64Pathogenesis-related protein PR-4B OS=Nicotiana ta... [more]
PR4A_TOBAC2.256e-4775.70Pathogenesis-related protein PR-4A OS=Nicotiana ta... [more]
PR4_PRUPE6.563e-4773.83Pathogenesis-related protein PR-4 (Fragment) OS=Pr... [more]
HEVL_ARATH3.981e-4474.76Hevein-like protein OS=Arabidopsis thaliana GN=HEL... [more]
PRP2_SOLLC8.870e-4471.43Pathogenesis-related protein P2 OS=Solanum lycoper... [more]
BARW_HORVU8.302e-4274.53Barwin OS=Hordeum vulgare PE=1 SV=1[more]
WHW2_WHEAT2.671e-4072.64Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC18001F07Rv Drought1 Citrus clementina cDNA clone C18001F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305142 ID=CX305142; Name=CX305142; organism=Citrus clementina; type=EST; length=353bp
TTTTTTTTTTTTTTTTTTTTTTTGGGGTTCAATCTCCGCAGTTAACAAAC
TGGTAATTCACCATGAGGTGACCTTGAGCATTGCCTTTTCCATCAGTATC
CAGCTTTCGGAAAACACCGACATCCAAATCTAGACCGCCATTGCTGCACT
GATCAACAATTCTTACCGTTGCTTGAGCTCCTGTCCCTCTATTAGTCACC
CTTAAGCACTTGCCACAAGCAGCTTGTCCACGAGGTCCAACAGGGCCACA
GAAGGCAGTCCATCCATACTTCCGACGCCAAGCCAAGGGCTTGTTTGCAT
CCCAAGTTGAGCAATAAGCACTTGCAGCATTCAAGTTCCATCCAATTCTT
TCA
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