CX305155

Overview
NameCX305155
Unique NameCX305155
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length347
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9835 contig Ccv1_Contig9835:297..644. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305155 vs. ExPASy Swiss-Prot
Match: PR4A_TOBAC (Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.752e-20
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 2
Query:    8 VTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 175
            VTN+GTG Q  VRIVDQC+NGGLDLD  VF +LDTNG+GYQQG LTV+YEFVNCND
Sbjct:   92 VTNTGTGTQTTVRIVDQCSNGGLDLDVNVFNQLDTNGVGYQQGHLTVNYEFVNCND 147          
BLAST of CX305155 vs. ExPASy Swiss-Prot
Match: PR4B_TOBAC (Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.135e-19
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 2
Query:    8 VTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 175
            VTN+GTG Q  VRIVDQC+NGGLDLD  VF +LDTNG+GYQQG L V+YEFVNCND
Sbjct:   92 VTNTGTGTQATVRIVDQCSNGGLDLDVNVFNQLDTNGLGYQQGHLIVNYEFVNCND 147          
BLAST of CX305155 vs. ExPASy Swiss-Prot
Match: PRP2_SOLLC (Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.230e-18
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 2
Query:    8 VTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNC 169
            VTN+GTG Q+ VRIVDQC NGGLDLD  VF +LDTNG+GYQ+G L V+YEFVNC
Sbjct:   90 VTNTGTGTQETVRIVDQCRNGGLDLDVNVFNRLDTNGLGYQRGNLNVNYEFVNC 143          
BLAST of CX305155 vs. ExPASy Swiss-Prot
Match: WIN_SOYBN (Wound-induced protein (Fragment) OS=Glycine max GN=WIN PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.367e-17
Identity = 39/56 (69.64%), Postives = 48/56 (85.71%), Query Frame = 2
Query:    8 VTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 175
            VTN+GTGA  IVRIVDQC+NGGLDLD GVF ++DT+G GYQQG L V+Y+FV+C +
Sbjct:   32 VTNTGTGANTIVRIVDQCSNGGLDLDVGVFNRIDTDGRGYQQGHLIVNYQFVDCGN 87          
BLAST of CX305155 vs. ExPASy Swiss-Prot
Match: HEVE_HEVBR (Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 8.996e-17
Identity = 37/56 (66.07%), Postives = 49/56 (87.50%), Query Frame = 2
Query:    8 VTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 175
            VTN+GTGA+  VRIVDQC+NGGLDLD  VF++LDT+G GY++G +TV+Y+FV+C D
Sbjct:  134 VTNTGTGAKTTVRIVDQCSNGGLDLDVNVFRQLDTDGKGYERGHITVNYQFVDCGD 189          
BLAST of CX305155 vs. ExPASy Swiss-Prot
Match: WHW2_WHEAT (Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.534e-16
Identity = 41/57 (71.93%), Postives = 46/57 (80.70%), Query Frame = 2
Query:    8 VTNSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 175
            VTN  TGAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:   92 VTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 148          
BLAST of CX305155 vs. ExPASy Swiss-Prot
Match: WHW1_WHEAT (Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.534e-16
Identity = 41/57 (71.93%), Postives = 46/57 (80.70%), Query Frame = 2
Query:    8 VTNSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 175
            VTN  TGAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:   90 VTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 146          
BLAST of CX305155 vs. ExPASy Swiss-Prot
Match: BARW_HORVU (Barwin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.534e-16
Identity = 41/57 (71.93%), Postives = 46/57 (80.70%), Query Frame = 2
Query:    8 VTNSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 175
            VTN  TGAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:   69 VTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 125          
BLAST of CX305155 vs. ExPASy Swiss-Prot
Match: WIN2_SOLTU (Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.004e-16
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 2
Query:    8 VTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 175
            VTN+ TGAQ  VRIVDQC+NGGLDLD  VF+++DT+G+G QQG L V+Y+FVNC D
Sbjct:  143 VTNTRTGAQTTVRIVDQCSNGGLDLDINVFQQIDTDGVGNQQGHLIVNYQFVNCGD 198          
BLAST of CX305155 vs. ExPASy Swiss-Prot
Match: PR4_PRUPE (Pathogenesis-related protein PR-4 (Fragment) OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.216e-15
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 2
Query:    8 VTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 175
            VTN+GTGA+  VRIVDQC+NGGLDLD  VF ++DTNG G  QG L V+Y+FV+C D
Sbjct:   52 VTNTGTGAKVTVRIVDQCSNGGLDLDVNVFNQIDTNGQGNAQGHLIVNYDFVDCGD 107          
The following BLAST results are available for this feature:
BLAST of CX305155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PR4A_TOBAC1.752e-2078.57Pathogenesis-related protein PR-4A OS=Nicotiana ta... [more]
PR4B_TOBAC1.135e-1976.79Pathogenesis-related protein PR-4B OS=Nicotiana ta... [more]
PRP2_SOLLC6.230e-1874.07Pathogenesis-related protein P2 OS=Solanum lycoper... [more]
WIN_SOYBN2.367e-1769.64Wound-induced protein (Fragment) OS=Glycine max GN... [more]
HEVE_HEVBR8.996e-1766.07Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2[more]
WHW2_WHEAT1.534e-1671.93Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1[more]
WHW1_WHEAT1.534e-1671.93Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1[more]
BARW_HORVU1.534e-1671.93Barwin OS=Hordeum vulgare PE=1 SV=1[more]
WIN2_SOLTU2.004e-1667.86Wound-induced protein WIN2 OS=Solanum tuberosum GN... [more]
PR4_PRUPE2.216e-1566.07Pathogenesis-related protein PR-4 (Fragment) OS=Pr... [more]

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Properties
Property NameValue
Genbank descriptionC18001G12Rv Drought1 Citrus clementina cDNA clone C18001G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305155 ID=CX305155; Name=CX305155; organism=Citrus clementina; type=EST; length=347bp
GCGGGGGGTCACAAACAGTGGTACAGGAGCCCAACAAATTGTGAGAATTG
TTGATCAGTGTGCCAATGGAGGCTTAGATTTGGACGAAGGAGTGTTCAAG
AAATTGGACACCAATGGAATAGGCTATCAACAAGGCTTCCTTACTGTCAG
CTACGAGTTTGTGAACTGCAATGATTAAAGCACCATCTATAATTCCATGA
TCGATCGAAGCTTAATGCTGTAATAGGGTTAATTTATTAATAATTATCCC
TCTATATACTTAGTTCATAAATAAAATAAAACTTCTGATGAAGTATCAAG
AAGTGCTCATGGGCACTACAGTTATGTAATAAAAGTTTCCTTTTTTT
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