CX305163

Overview
NameCX305163
Unique NameCX305163
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length449
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX305163_ssr136 microsatellite CX305163_ssr136:136..147. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX305163 vs. ExPASy Swiss-Prot
Match: RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.347e-13
Identity = 30/36 (83.33%), Postives = 35/36 (97.22%), Query Frame = -1
Query:  306 GVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITK 413
            GVFLKFGCKVEFWICL+LT+FGY+PGI+YA+Y ITK
Sbjct:   19 GVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54          
BLAST of CX305163 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSJ (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.806e-12
Identity = 31/36 (86.11%), Postives = 32/36 (88.89%), Query Frame = -1
Query:  306 GVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITK 413
            GVFLKFGC  EFWICLLLT  GYIPGIIYA+YAITK
Sbjct:   20 GVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55          
BLAST of CX305163 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 4.806e-12
Identity = 31/36 (86.11%), Postives = 32/36 (88.89%), Query Frame = -1
Query:  306 GVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITK 413
            GVFLKFGC  EFWICLLLT  GYIPGIIYA+YAITK
Sbjct:   20 GVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55          
BLAST of CX305163 vs. ExPASy Swiss-Prot
Match: LTI6A_ORYSJ (Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.198e-12
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = -1
Query:  306 GVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITK 413
            GVF KFGC +EFWICLLLT FGY+PGIIYAV+ ITK
Sbjct:   21 GVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56          
BLAST of CX305163 vs. ExPASy Swiss-Prot
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.071e-11
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = -1
Query:  306 GVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITK 413
            GVFL+FGC VEFWICL+LT+ GYIPGIIYA+Y +TK
Sbjct:   19 GVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54          
The following BLAST results are available for this feature:
BLAST of CX305163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RCI2B_ARATH4.347e-1383.33Hydrophobic protein RCI2B OS=Arabidopsis thaliana ... [more]
LTI6B_ORYSJ4.806e-1286.11Hydrophobic protein LTI6B OS=Oryza sativa subsp. j... [more]
LTI6B_ORYSI4.806e-1286.11Hydrophobic protein LTI6B OS=Oryza sativa subsp. i... [more]
LTI6A_ORYSJ8.198e-1280.56Hydrophobic protein LTI6A OS=Oryza sativa subsp. j... [more]
RCI2A_ARATH1.071e-1177.78Hydrophobic protein RCI2A OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionC18002A02Rv Drought1 Citrus clementina cDNA clone C18002A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305163 ID=CX305163; Name=CX305163; organism=Citrus clementina; type=EST; length=449bp
TTTTTTTTTTTTTTTTTTTTGGCCAAGAAAAATTTTCTGTCGCGGAATTT
ACATTAAAATAATGAACTAAAGTTCATAAAAGGGACAAATCATACAAAAA
GGGCGGAAAAAATTAAAGATCAACAAAGGAACACTTCACTCACTCACTCT
CTCACACACGCGCACACACAACACTTAAAAGAAGAATCATAATCCATCTG
GCTACATCAAATCAGAACTGTCCATCAAATGGTTGTAAATAAAAATCTCA
TAAACACATACTGCCCCTCAGATCTCTCCATAGAATAAGAAGAGAGAGAT
CAATTCTTGGTGATGGCATAAACAGCATAAATAATTCCAGGGATATACCC
GAAAATTGTCAACAGCAAACAGATCCAAAACTCAACCTTGCAGCCAAATT
TGAGAAAGACACCGAGAGGAGGCAAAATGATAGCCAAGATAATATCAAT
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