CX305174

Overview
NameCX305174
Unique NameCX305174
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX305174_ssr172 microsatellite CX305174_ssr172:172..183. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig872 contig Ccv1_Contig872:301..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.567e-27
Identity = 62/83 (74.70%), Postives = 70/83 (84.34%), Query Frame = -2
Query:  271 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 519
            VKVEVEEG +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKASMENGVLTVT           KAIEISG
Sbjct:   67 VKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPEVKAIEISG 149          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.046e-27
Identity = 62/83 (74.70%), Postives = 69/83 (83.13%), Query Frame = -2
Query:  271 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 519
            VKVEV++G ILQISGER+KEQEEK D+WHRVERSSGKFLRRFRLPDNAK EQ+KASMENGVLTVT           K+I+ISG
Sbjct:   79 VKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVKSIQISG 161          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.491e-27
Identity = 60/83 (72.29%), Postives = 71/83 (85.54%), Query Frame = -2
Query:  271 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 519
            VKVE+EEG++LQISGER+KE+EEKNDKWHRVERSSGKFLRRFRLP+NAKV++VKA+M NGV+TVT           KAI+ISG
Sbjct:   75 VKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.559e-27
Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = -2
Query:  271 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 519
            VKVEVE+G +LQISGERSKEQEEK DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT           K+I+++G
Sbjct:   79 VKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQVTG 161          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.559e-27
Identity = 61/83 (73.49%), Postives = 69/83 (83.13%), Query Frame = -2
Query:  271 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 519
            VKVEV++G ILQISGERS+EQEEK+DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT           K+I+ISG
Sbjct:   77 VKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQISG 159          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.559e-27
Identity = 61/83 (73.49%), Postives = 69/83 (83.13%), Query Frame = -2
Query:  271 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 519
            VKVEVEEG +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKA MENGVLTVT           KAIEISG
Sbjct:   68 VKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.016e-26
Identity = 60/83 (72.29%), Postives = 70/83 (84.34%), Query Frame = -2
Query:  271 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 519
            VKVEVEE R+LQISGER+ E+E+KNDKWHR+ERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT           K+IEISG
Sbjct:   72 VKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVKKPEVKSIEISG 154          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.016e-26
Identity = 60/83 (72.29%), Postives = 69/83 (83.13%), Query Frame = -2
Query:  271 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 519
            VKVEVEEG +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKA +ENGVLTVT           KAIEISG
Sbjct:   68 VKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.326e-26
Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = -2
Query:  271 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 519
            VKVEVE+G ILQISGERS E EEKNDKWHRVERSSGKF RRFRLP+NAK+E++KASMENGVL+VT           K+I+ISG
Sbjct:   75 VKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157          
BLAST of CX305174 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 1.732e-26
Identity = 60/83 (72.29%), Postives = 67/83 (80.72%), Query Frame = -2
Query:  271 VKVEVEEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 519
            VKVEVE+G +LQISGER KEQEEK DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT           K+I+I+G
Sbjct:   72 VKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQITG 154          
The following BLAST results are available for this feature:
BLAST of CX305174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
HS16C_ORYSJ1.567e-2774.7016.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HS17A_ORYSJ2.046e-2774.7017.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_DAUCA3.491e-2772.2917.8 kDa class I heat shock protein OS=Daucus caro... [more]
HS181_ORYSJ4.559e-2772.2918.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS177_ORYSJ4.559e-2773.4917.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16B_ORYSJ4.559e-2773.4916.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HSP11_SOLLC1.016e-2672.2917.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HS16A_ORYSJ1.016e-2672.2916.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HS17C_ARATH1.326e-2672.2917.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HS174_ORYSJ1.732e-2672.2917.4 kDa class I heat shock protein OS=Oryza sativ... [more]

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Properties
Property NameValue
Genbank descriptionC18002B02Rv Drought1 Citrus clementina cDNA clone C18002B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305174 ID=CX305174; Name=CX305174; organism=Citrus clementina; type=EST; length=520bp
TTTNTTTTTTTTTTTTTTTTTTTTTATTCGCATTACAAAATATATTTTAT
TGCATCACACTTTTTTATCATTTAAAAAACTAGTTACAACGCTTGAGACT
GGCTCCTGAAGCTCTTGCAAACACACAAACATAATCACATCAAATTAAAC
AGGGGGAAGGGAAGAAAACAAACACACACACACATACAAACACACAAGGG
CTTTGCTTTCGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAA
ACATTTACAGTTATCACTTAGCCAGAGATCTCAATAGCCTTAACTTCAGG
TTTCTTCTCCTCCTGTTTAGGAACGGTGACTGTGAGCACACCATTCTCCA
TGCTGGCCTTAACCTGTTCCACCTTAGCATTGTCGGGCAACCTGAACCTC
CTCAGGAACTTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTT
CTCTTCCTGCTCCTTGCTCCTCTCTCCGCTTATCTGCAGAATCCTGCCCT
CTTCAACCTCAACTTTTACT
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