CX305179

Overview
NameCX305179
Unique NameCX305179
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length387
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305179 vs. ExPASy Swiss-Prot
Match: PX115_ORYSJ (Peroxisomal membrane protein 11-5 OS=Oryza sativa subsp. japonica GN=PEX11-5 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.121e-14
Identity = 36/46 (78.26%), Postives = 43/46 (93.48%), Query Frame = -3
Query:  245 AMDIVVAVGLLQLAPKKVTPRVTEAFGFVTSIISCYQLLPAPVKAK 382
            ++DIVVA+GLLQLAPKKVTPRVT AFGF +S+I+CYQLLPAP K+K
Sbjct:  188 SLDIVVAIGLLQLAPKKVTPRVTGAFGFASSLIACYQLLPAPAKSK 233          
BLAST of CX305179 vs. ExPASy Swiss-Prot
Match: PX11D_ARATH (Peroxisomal membrane protein 11D OS=Arabidopsis thaliana GN=PEX11D PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.911e-14
Identity = 38/48 (79.17%), Postives = 40/48 (83.33%), Query Frame = -3
Query:  239 AMDIVVAVGLLQLAPKKVTPRVTEAFGFVTSIISCYQLLPAPVKAKAP 382
            AMDIVVA GLLQLAP K+TPRVT AFGF+TSIISCYQLLP   K K P
Sbjct:  189 AMDIVVAAGLLQLAPTKITPRVTGAFGFITSIISCYQLLPTRPKIKTP 236          
BLAST of CX305179 vs. ExPASy Swiss-Prot
Match: PX11E_ARATH (Peroxisomal membrane protein 11E OS=Arabidopsis thaliana GN=PEX11E PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.113e-13
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = -3
Query:  239 AMDIVVAVGLLQLAPKKVTPRVTEAFGFVTSIISCYQLLPAPVKAKAP 382
            +MDI+VA+GLLQLAPK ++PRVT AFGF TS+ISCYQLLP+  K K P
Sbjct:  184 SMDIIVAIGLLQLAPKTISPRVTGAFGFTTSLISCYQLLPSRPKLKTP 231          
BLAST of CX305179 vs. ExPASy Swiss-Prot
Match: PX111_ORYSJ (Peroxisomal membrane protein 11-1 OS=Oryza sativa subsp. japonica GN=PEX11-1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.760e-13
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = -3
Query:  242 AMDIVVAVGLLQLAPKKVTPRVTEAFGFVTSIISCYQLLPA---PVKAKA 382
            AMD+VVAVGLLQL+PKK+TPRVT AFGFVTS+ISCYQ LP+    +K KA
Sbjct:  188 AMDVVVAVGLLQLSPKKITPRVTGAFGFVTSLISCYQQLPSRAPAIKVKA 237          
BLAST of CX305179 vs. ExPASy Swiss-Prot
Match: PX11C_ARATH (Peroxisomal membrane protein 11C OS=Arabidopsis thaliana GN=PEX11C PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.708e-13
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = -3
Query:  245 MDIVVAVGLLQLAPKKVTPRVTEAFGFVTSIISCYQLLPAPVKAK 379
            MD+VVA GLLQLAPKKVTPRVT AFGF +S+ISCYQLLP+  K+K
Sbjct:  189 MDVVVAFGLLQLAPKKVTPRVTGAFGFASSLISCYQLLPSHPKSK 233          
The following BLAST results are available for this feature:
BLAST of CX305179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PX115_ORYSJ1.121e-1478.26Peroxisomal membrane protein 11-5 OS=Oryza sativa ... [more]
PX11D_ARATH1.911e-1479.17Peroxisomal membrane protein 11D OS=Arabidopsis th... [more]
PX11E_ARATH2.113e-1370.83Peroxisomal membrane protein 11E OS=Arabidopsis th... [more]
PX111_ORYSJ2.760e-1374.00Peroxisomal membrane protein 11-1 OS=Oryza sativa ... [more]
PX11C_ARATH4.708e-1377.78Peroxisomal membrane protein 11C OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionC18002B07Rv Drought1 Citrus clementina cDNA clone C18002B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305179 ID=CX305179; Name=CX305179; organism=Citrus clementina; type=EST; length=387bp
CGAGGGACTTTTTTTTTTTTTTTTTTTTTTTATGTATTTTTGGCAAAGAC
AAGCCAGGGGTCTTATTACTACTTTAAAAGAGCAAAGTGATCTTGACAAC
AAGTGGAATATTTTAATGTCACCTTATAAGGTGGCGAATTGAGCAAAAGC
ATACACCAACATCTGACTTATGTAACCACTACGAATAATTATTTTAATGT
CACTGAAGCTTGTGCAGCAAAGCCGCCTTTTCCATTCATGGGGCCTTGGC
TTTTACTGGAGCTGGAAGTAGCTGATAACAAGAGATGATAGAGGTAACAA
ATCCAAATGCTTCTGTTACACGAGGAGTAACTTTCTTGGGGGCCAATTGA
AGCAACCCAACCGCCACCACAATGTCCATGGCTCCCG
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