CX305181

Overview
NameCX305181
Unique NameCX305181
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length411
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig850 contig Ccv1_Contig850:1..411. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX305181 vs. ExPASy Swiss-Prot
Match: PPA1_SOLLC (Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.155e-17
Identity = 40/52 (76.92%), Postives = 44/52 (84.62%), Query Frame = 2 
Query:    8 GKLAIIYKSEKRNEMVQEGYRILGNSGDQWSDLLGSPMPSRSFKLPNPTYYI 163
            GK A  YKSE+RN MV+EG+RI+GNSGDQWSDLLGS M  RSFKLPNP YYI
Sbjct:  203 GKTATTYKSERRNAMVEEGFRIVGNSGDQWSDLLGSSMSYRSFKLPNPMYYI 254
[Close]
BLAST of CX305181 vs. ExPASy Swiss-Prot
Match: VSP1_ARATH (Vegetative storage protein 1 OS=Arabidopsis thaliana GN=VSP1 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.379e-11
Identity = 28/49 (57.14%), Postives = 38/49 (77.55%), Query Frame = 2 
Query:   20 IIYKSEKRNEMVQEGYRILGNSGDQWSDLLGSPMPSRSFKLPNPTYYIP 166
            ++YKS+ RN +V++GY I+GN GDQW+DL+    P R FKLPNP YY+P
Sbjct:  222 VVYKSKVRNSLVKKGYNIVGNIGDQWADLV-EDTPGRVFKLPNPLYYVP 269
The following BLAST results are available for this feature:
BLAST of CX305181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PPA1_SOLLC3.155e-1776.92Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1... [more]
VSP1_ARATH3.379e-1157.14Vegetative storage protein 1 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC18002B09Rv Drought1 Citrus clementina cDNA clone C18002B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305181 ID=CX305181; Name=CX305181; organism=Citrus clementina; type=EST; length=411bp
GCGGGATGGGAAACTGGCGATAATTTACAAATCGGAGAAGAGAAACGAGA
TGGTACAAGAGGGATACCGGATTCTGGGAAACTCTGGGGACCAATGGAGC
GATCTATTGGGTTCTCCCATGCCCAGTCGCTCTTTCAAGCTTCCAAATCC
CACGTATTACATCCCTTGATTGGCGCAAATTGTTAATTTTTTCAATAAAA
CAAACAGGACCTTGTTCTTGTAACCTGAAATTGTATAGGCATTAAAAACG
CAAATGTTAATTGAACACAGTAAGTTTATGGTGCCAACACAAATGTTTGC
AATGTGTTGTTGCTACCAACCAAACGTGAATCAAAATGTACAACAGCTGT
AGAAAGCAAGAATAAAGCAGCATATTTCTGTTGTCAAAAAAAAAAAAAAA
AAAAAAAAAAA
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