CX305186

Overview
NameCX305186
Unique NameCX305186
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length599
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8083 contig Ccv1_Contig8083:661..1259. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305186 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 8.082e-43
Identity = 84/169 (49.70%), Postives = 116/169 (68.64%), Query Frame = 2
Query:    8 EGLGLKTDRLKEKTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRALANSSLEPRISIAVFFNP--SERDSLYGPFPELISPEKPARFRQLTYTDYVTRFFTKQLDGKTLVNYYRL 508
            E LGL T+ LK+       +++GHYYP CPQPDLT+G+T H+D   LTILLQD  GGLQ+ H + WVDV PVPGALV+N+GD+LQ+++ND++ISVEHR LAN +  PRIS+A FF+        +YGP  E++S E P  +R  T T+Y   + +K  DG + + Y ++
Sbjct:  198 EALGLNTNHLKDMDCTNSLLLLGHYYPPCPQPDLTLGLTKHSDNSFLTILLQDHIGGLQVLHDQYWVDVPPVPGALVVNVGDLLQLITNDKFISVEHRVLANVA-GPRISVACFFSSYLMANPRVYGPIKEILSEENPPNYRDTTITEYAKFYRSKGFDGTSGLLYLKI 365          
BLAST of CX305186 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 4.903e-40
Identity = 84/173 (48.55%), Postives = 116/173 (67.05%), Query Frame = 2
Query:    8 EGLGLKTDRLKEKTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRALANSSLEPRISIAVFFNPSERDS------LYGPFPELISPEKPARFRQLTYTDYVTRFFTKQLDGKTLVNYYRL 508
            E LGLK + L+E    EG +++GHYYP CPQP+LT G + H+D G LTIL+QD  GGLQI    +W+DV  +PGALVINI D+LQ+++ND++ SVEHR LAN  + PRIS+AV F    +        LYGP  ELIS E P  ++++T  D++T  F K+ D  + ++ +RL
Sbjct:  228 EALGLKPNHLEEMDCAEGLILLGHYYPACPQPELTFGTSKHSDSGFLTILMQDQIGGLQILLENQWIDVPFIPGALVINIADLLQLITNDKFKSVEHRVLAN-KVGPRISVAVAFGIKTQTQEGVSPRLYGPIKELISEENPPIYKEVTVKDFITIRFAKRFDDSSSLSPFRL 399          
BLAST of CX305186 vs. ExPASy Swiss-Prot
Match: ACCH3_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.178e-39
Identity = 76/169 (44.97%), Postives = 112/169 (66.27%), Query Frame = 2
Query:    8 EGLGLKTDRLKEKTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRALANSSLEPRISIAVFFNPSERDS--LYGPFPELISPEKPARFRQLTYTDYVTRFFTKQLDGKTLVNYYRL 508
            E LGL+ + L +    +G +M+ HYYP CP+PDLT+G + H+D   LT+LL D   GLQ++    W DV  V GAL+INIGD+LQ+++ND++IS+EHR LAN +   R+S+A FF    R +  +YGP  EL+S E P ++R+ T  DY T F  K LDG + + ++++
Sbjct:  201 EALGLEPNHLNDMDCSKGLLMLSHYYPPCPEPDLTLGTSQHSDNSFLTVLLPDQIEGLQVRREGHWFDVPHVSGALIINIGDLLQLITNDKFISLEHRVLANRATRARVSVACFFTTGVRPNPRMYGPIRELVSEENPPKYRETTIKDYATYFNAKGLDGTSALLHFKI 369          
BLAST of CX305186 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.421e-39
Identity = 80/169 (47.34%), Postives = 111/169 (65.68%), Query Frame = 2
Query:    8 EGLGLKTDRLKEKTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRALANSSLEPRISIAVFF--NPSERDSLYGPFPELISPEKPARFRQLTYTDYVTRFFTKQLDGKTLVNYYRL 508
            EGLGL    LK+           +YYP CPQP+LT+G   HTD G +TILLQDD GGLQ+ H   WVDV P PG+LV+NIGD LQ++SND+Y+SVEHRA++N ++  R+SI  FF  +P +   LYGP  EL+S + P ++R  T  D+ +    + LDG + ++ Y++
Sbjct:  196 EGLGLDRSYLKDYMDCFHLFCSCNYYPPCPQPELTMGTIQHTDIGFVTILLQDDMGGLQVLHQNHWVDVPPTPGSLVVNIGDFLQLLSNDKYLSVEHRAISN-NVGSRMSITCFFGESPYQSSKLYGPITELLSEDNPPKYRATTVKDHTSYLHNRGLDGTSALSRYKI 363          
BLAST of CX305186 vs. ExPASy Swiss-Prot
Match: ACCH2_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.130e-36
Identity = 75/160 (46.88%), Postives = 106/160 (66.25%), Query Frame = 2
Query:    8 EGLGLKTDRLKEKTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRALANSSLEPRISIAVFFNPSERDS--LYGPFPELISPEKPARFRQLTYTDYVTRFFTKQLDG 481
            E LGL  + LK+   L+G  M+ HY+P CP+PDLT G + H+D   LT+LL D+  GLQ+     W DV  VPGAL+INIGD+LQ+++ND++IS++HR LAN +   R+S+A FF+   + +  +YGP  EL+S E P ++R+ T  DY T F  K L G
Sbjct:  201 EALGLNPNHLKDMECLKGLRMLCHYFPPCPEPDLTFGTSKHSDGSFLTVLLPDNIEGLQVCREGYWFDVPHVPGALIINIGDLLQLITNDKFISLKHRVLANRATRARVSVACFFHTHVKPNPRVYGPIKELVSEENPPKYRETTIRDYATYFNGKGLGG 360          
BLAST of CX305186 vs. ExPASy Swiss-Prot
Match: GSL_ARATH (Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.995e-33
Identity = 73/172 (42.44%), Postives = 108/172 (62.79%), Query Frame = 2
Query:    8 EGLGLKTDRLKEKTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRALANSSLEPRISIAVFF-----NPSERDSLYGPFPELISPEKPARFRQLTYTDYVTRFFTKQLDGKTLVNYYRL 508
            E LGL  + LKE    +G  M+ H +P CP+P+ T G   HTD   LTILL D+ GGLQ+ +   W+DV P P AL+ N+GD LQ++SND+++S+EHR LAN   EPRIS+A FF     +PS R  +YGP  EL+S   P ++R  T ++    +  ++ +G + +++ R+
Sbjct:  191 EALGLSPNHLKEMDCAKGLWMLCHCFPPCPEPNRTFGGAQHTDRSFLTILLNDNNGGLQVLYDGYWIDVPPNPEALIFNVGDFLQLISNDKFVSMEHRILANGGEEPRISVACFFVHTFTSPSSR--VYGPIKELLSELNPPKYRDTT-SESSNHYVARKPNGNSSLDHLRI 359          
BLAST of CX305186 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.338e-29
Identity = 66/145 (45.52%), Postives = 95/145 (65.52%), Query Frame = 2
Query:   77 HYYPYCPQPDLTVGITSHTDPGPLTILLQ-DDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRALANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQLTYTDYVTRFFTKQLDGKTLVNYYRL 508
            +YYP CPQPD  +G+T H+D   LT+L+Q +D  GLQIK   +WV VKP+P A ++NIGD+L+I++N  Y S+EHR + NS  E R+SIA F N      + GP   L+  +K ARF++LT  +Y    F++ LDGK  ++  R+
Sbjct:  216 NYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKE-RLSIATFHNVGMYKEV-GPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358          
BLAST of CX305186 vs. ExPASy Swiss-Prot
Match: FL3H_MALDO (Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.385e-26
Identity = 64/159 (40.25%), Postives = 98/159 (61.64%), Query Frame = 2
Query:    8 EGLGLKTDRLKEKTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKH--GEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRALANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQLTYTDYVTRFFTKQLD 478
            E +GL T+ L +      + +V ++YP CPQPDLT+G+  HTDPG +T+LLQD  GGLQ     G+ W+ V+PV GA V+N+GD   ++SN  + + +H+A+ NS+   R+SIA F NP++   +Y P   +   EKP     +TYT+   +  +K L+
Sbjct:  178 EAMGLDTEALTKACVDMDQKVVVNFYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATRDDGKTWITVQPVEGAFVVNLGDHGHLLSNGRFKNADHQAVVNSN-SSRLSIATFQNPAQEAIVY-PL-SVREGEKPILEAPITYTEMYKKKMSKDLE 333          
BLAST of CX305186 vs. ExPASy Swiss-Prot
Match: FLS_PETCR (Flavonol synthase/flavanone 3-hydroxylase OS=Petroselinum crispum GN=FLS PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.085e-26
Identity = 63/149 (42.28%), Postives = 93/149 (62.42%), Query Frame = 2
Query:   11 GLGLKTDRLKEKTFLEGR--MMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRALANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQLTYTDYV 451
            G+GL+   LK+ +  +    M+  +YYP CP+PDL +G+ +HTD   +TIL+ ++  GLQ+   + W DVK +P AL+I+IGD ++IMSN +Y SV HR   N   + R+S  VF  P   + L GP  +LI+ E PA+F+   Y DYV
Sbjct:  182 GIGLEKHELKKASGGDDLIYMLKINYYPPCPRPDLALGVVAHTDMSAITILVPNEVQGLQVHKDDHWYDVKYIPNALIIHIGDQIEIMSNGKYKSVYHRTTVNKD-KTRMSWPVFLEPPP-ELLTGPISKLITDENPAKFKTKKYKDYV 328          
BLAST of CX305186 vs. ExPASy Swiss-Prot
Match: ACCO1_ARATH (1-aminocyclopropane-1-carboxylate oxidase OS=Arabidopsis thaliana GN=ACO PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 3.085e-26
Identity = 68/167 (40.72%), Postives = 96/167 (57.49%), Query Frame = 2
Query:    8 EGLGLKTDRLKEKTFLEGRMMVG---HYYPYCPQPDLTVGITSHTDPGPLTILLQDDK-GGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRALANSSLEPRISIAVFFNPSERDSLYGPFPELI----SPEKPARFRQLTYTDYVTRFFTKQLDGK 484
            E LGL+   LK+  +   R   G     YP CP PDL  G+ +HTD G + +L QDDK  GLQ+    EWVDV PV  ++V+N+GD L++++N +Y SVEHR L+ +  E R+SIA F+NP   DS+  P PELI      EK   + +  + DY+  +   +   K
Sbjct:  134 ENLGLEKGYLKKVFYGSKRPTFGTKVSNYPPCPNPDLVKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWVDVPPVKHSIVVNLGDQLEVITNGKYKSVEHRVLSQTDGEGRMSIASFYNPGS-DSVIFPAPELIGKEAEKEKKENYPRFVFEDYMKLYSAVKFQAK 299          
The following BLAST results are available for this feature:
BLAST of CX305186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ACCH1_ARATH8.082e-4349.701-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
DV4H_CATRO4.903e-4048.55Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]
ACCH3_ARATH3.178e-3944.971-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCH3_SOLLC5.421e-3947.341-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCH2_ARATH1.130e-3646.881-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
GSL_ARATH1.995e-3342.44Probable 2-oxoacid dependent dioxygenase OS=Arabid... [more]
SRG1_ARATH1.338e-2945.52Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
FL3H_MALDO1.385e-2640.25Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus d... [more]
FLS_PETCR3.085e-2642.28Flavonol synthase/flavanone 3-hydroxylase OS=Petro... [more]
ACCO1_ARATH3.085e-2640.721-aminocyclopropane-1-carboxylate oxidase OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionC18002C02Rv Drought1 Citrus clementina cDNA clone C18002C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305186 ID=CX305186; Name=CX305186; organism=Citrus clementina; type=EST; length=599bp
GCGGGGTGAAGGTTTGGGGTTGAAAACCGATAGGTTGAAGGAAAAGACCT
TCCTGGAAGGGAGGATGATGGTGGGCCATTATTATCCCTACTGTCCGCAG
CCTGATCTGACAGTGGGGATCACATCTCATACTGATCCAGGGCCATTGAC
AATCTTGTTGCAAGATGATAAAGGTGGGCTGCAAATTAAGCATGGTGAGG
AATGGGTGGATGTTAAACCAGTTCCAGGAGCTCTGGTTATTAACATTGGG
GATATACTTCAGATTATGTCCAATGATGAATACATAAGTGTAGAGCATAG
AGCATTGGCTAATTCGTCCCTGGAACCACGAATCTCAATTGCTGTTTTCT
TCAATCCAAGCGAGAGGGACAGCCTTTATGGACCATTCCCGGAGCTGATA
TCCCCAGAGAAGCCAGCTCGTTTTCGGCAGCTCACATACACAGACTATGT
AACAAGGTTCTTCACAAAACAGTTAGATGGAAAAACATTGGTGAATTACT
ATAGGCTGTAAGAAACAAAACTTGGTAAATCTGGTTGTTTGTGCCTGTAT
AAACTATTCTTACGTAAGAATAACAATTCAATTGTTCGTCTCATAAAAA
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