CX305189

Overview
NameCX305189
Unique NameCX305189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length534
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig860 contig Ccv1_Contig860:24..557. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305189 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.592e-22
Identity = 55/160 (34.38%), Postives = 90/160 (56.25%), Query Frame = 3
Query:   39 ATTLSFLILALASNSLLVLGTSSVPEPLLDVHGNKVESTLKYYIVSAIWXXXXXXXXXXXXXXXYCPLDVIQLPSDMQNGIELTLSPYNNST-IVRESTDLNLRFSVLLSGRD-YCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIG 512
            AT +  L+ A  S S      ++   P+LD  G+++++ ++YY++S+I                 CP  V+Q  SD+ NG  +  S  ++   +VR STD+N+ F  +   RD  C+   +W++DNYD ++GKW++TT G+ G PG  TL +WFK+EK G
Sbjct:    4 ATAVVLLLFAFTSKSYFFGVANAANSPVLDTDGDELQTGVQYYVLSSISGAGGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPI---RDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAG 160          
BLAST of CX305189 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 8.282e-19
Identity = 54/162 (33.33%), Postives = 84/162 (51.85%), Query Frame = 3
Query:   30 ISLATTLSFLILALASNSLLVLGTSSVPEPLLDVHGNKVESTLKYYIVSAI--WXXXXXXXXXXXXXXXYCPLDVIQLPSDMQNGIELTLSPYN-NSTIVRESTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEK 506
            +SL+      +LA A+N LL     S P P+LD+ G K+ +   YYIV  +                   CP  V+Q   ++ +   L   P N    +VR STDLN+ FS  +  R       +W++D YD ++G++F+T GG+ G+PG ET+ +WFK+E+
Sbjct:    7 LSLSFFFVSALLAAAANPLLS-AADSAPNPVLDIDGEKLRTGTNYYIVPVLRDHGGGLTVSATTPNGTFVCPPRVVQTRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFSAFMPCR--WTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEE 165          
BLAST of CX305189 vs. ExPASy Swiss-Prot
Match: LSPI_CARPA (Latex serine proteinase inhibitor OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.909e-15
Identity = 52/144 (36.11%), Postives = 75/144 (52.08%), Query Frame = 3
Query:  111 PEPLLDVHGNKVESTLKYYIVSAIWXXXXXXXXXXXXXXXY-CPLDVIQLPSDMQNGIELTLSPYNN--STIVRESTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGTYK 533
            P+P++D+ G  V   + Y++VSAIW                 CPL V+Q P D  NG  +  S   N    IV ES DLN++F++ ++    CNE   WKVD +    G W +T GG  G+ G E+  + FK++K G  P +YK
Sbjct:    3 PKPIVDIDGKPVLYGVDYFVVSAIWGAGGGGLTVYGPGNKKKCPLSVVQDPFD--NGEPIIFSAIKNVKDNIVFESVDLNVKFNITIN----CNETTAWKVDRFPGVIG-WTVTLGGEKGYHGFESTHSMFKIKKAG-LPFSYK 138          
The following BLAST results are available for this feature:
BLAST of CX305189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ASP_THECC3.592e-2234.3821 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU8.282e-1933.33Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
LSPI_CARPA1.909e-1536.11Latex serine proteinase inhibitor OS=Carica papaya... [more]
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Properties
Property NameValue
Genbank descriptionC18002C08Rv Drought1 Citrus clementina cDNA clone C18002C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305189 ID=CX305189; Name=CX305189; organism=Citrus clementina; type=EST; length=534bp
GCGGGAGCTTTGAAAACAACAAAATGAAGATTTCATTAGCAACAACACTC
TCTTTCCTTATCCTTGCCTTGGCCTCAAACTCTTTGTTGGTCTTGGGCAC
CTCATCAGTTCCTGAACCTCTCCTTGATGTCCACGGAAACAAGGTCGAAT
CCACCCTTAAGTACTACATAGTCTCAGCCATCTGGGGAGCTGGCGGTGGT
GGAGTTAGCCTACACGGTGGCAGAAACGGATATTGTCCGCTGGACGTTAT
CCAGTTACCTTCTGATATGCAAAATGGAATCGAATTAACACTGTCACCGT
ATAACAATTCTACAATTGTCCGAGAATCCACTGATCTCAACTTGAGATTC
TCAGTGTTGCTATCTGGACGTGACTATTGTAACGAACAACCGTTGTGGAA
AGTTGATAATTATGACGCGGCATCAGGCAAATGGTTTATAACAACCGGGG
GACTTGATGGTCACCCTGGAGCTGAAACTTTGCTAAATTGGTTTAAGCTT
GAGAAAATTGGAAACTTTCCAGGTACATACAAAA
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