CX305190

Overview
NameCX305190
Unique NameCX305190
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length404
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10111 contig Ccv1_Contig10111:527..930. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305190 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.206e-24
Identity = 52/109 (47.71%), Postives = 71/109 (65.14%), Query Frame = -1
Query:   75 DDNSTIVRESTDLNLRFVGLLSGSKQCNELPLWKVDNYDASSGRWFITTGGLDGHPGAETLLNWFKLEKTNLPGAYKIVHCPSVCESCVKLCSSAGRFSFEDGVRRLVL 401
            D    +VR STD+N+ FV +    + C+   +W++DNYD S+G+W++TT G+ G PG  TL +WFK+EK  + G YK   CPSVC+SC  LCS  GR S +DG  RL L
Sbjct:   92 DSKDDVVRVSTDVNIEFVPIRD--RLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVLG-YKFRFCPSVCDSCTTLCSDIGRHSDDDGQIRLAL 197          
BLAST of CX305190 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 1.992e-19
Identity = 46/110 (41.82%), Postives = 68/110 (61.82%), Query Frame = -1
Query:   57 IVRESTDLNLRFVGLLSGSKQCNELPLWKVDNYDASSGRWFITTGGLDGHPGAETLLNWFKLEKTNLPGAYKIVHCPSVCESCVKLCSSAGRFSFEDGVRRLVLVRDDEP 386
            +VR STDLN+ F   +    +     +W++D YD S+G++F+T GG+ G+PG ET+ +WFK+E+    G YK+V CP+VC SC   C   G +  + G RRL L   D+P
Sbjct:  104 VVRVSTDLNINFSAFMPC--RWTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCGSGFYKLVFCPTVCGSCKVKCGDVGIYIDQKGRRRLAL--SDKP 209          
BLAST of CX305190 vs. ExPASy Swiss-Prot
Match: LSPI_CARPA (Latex serine proteinase inhibitor OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.255e-12
Identity = 40/107 (37.38%), Postives = 59/107 (55.14%), Query Frame = -1
Query:   66 IVRESTDLNLRFVGLLSGSKQCNELPLWKVDNYDASSGRWFITTGGLDGHPGAETLLNWFKLEKTNLPGAYKIVHCPSVCESCVKLCSSAGRFSFEDGVRRLVLVRD 386
            IV ES DLN++F   ++    CNE   WKVD +    G W +T GG  G+ G E+  + FK++K  LP +YK   CPS   + +  C++   F  +  +RRL+L  D
Sbjct:   72 IVFESVDLNVKFNITIN----CNETTAWKVDRFPGVIG-WTVTLGGEKGYHGFESTHSMFKIKKAGLPFSYKFHFCPSYPRTRLIPCNNVDIFFDKYRIRRLILTND 173          
The following BLAST results are available for this feature:
BLAST of CX305190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ASP_THECC1.206e-2447.7121 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU1.992e-1941.82Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
LSPI_CARPA5.255e-1237.38Latex serine proteinase inhibitor OS=Carica papaya... [more]
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Properties
Property NameValue
Genbank descriptionC18002C09Rv Drought1 Citrus clementina cDNA clone C18002C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305190 ID=CX305190; Name=CX305190; organism=Citrus clementina; type=EST; length=404bp
ATTGATTACACAGACGTCGATCTTTCTCTAGCTGGAATTAACACAACAGG
AAAAGCCGGCTCATCATCACGAACCAGAACCAGACGTCGAACGCCATCCT
CAAACGAAAAGCGGCCAGCGCTGCTGCAGAGTTTGACGCAAGACTCGCAA
ACAGATGGACAATGAACAATTTTGTATGCACCTGGTAGATTAGTTTTCTC
AAGCTTAAACCAATTTAGCAACGTTTCAGCTCCAGGGTGACCATCAAGTC
CCCCGGTTGTTATAAACCATCTGCCTGATGAAGCGTCATAGTTATCAACT
TTCCACAACGGTAGCTCGTTACATTGCTTACTTCCAGATAGTAACCCTAC
GAATCTCAAGTTGAGATCAGTGGATTCTCTGACAATTGTAGAATTGTCAT
CCCG
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