CX305191

Overview
NameCX305191
Unique NameCX305191
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX305191_ssr54 microsatellite CX305191_ssr54:54..63. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig853 contig Ccv1_Contig853:1..590. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS92_ARATH (40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 7.626e-83
Identity = 149/165 (90.30%), Postives = 161/165 (97.58%), Query Frame = 1
Query:   91 MVHISFYRNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585
            MV++ FYRNYGKTFKKPRRPYEKERLDAEL+LVGEYGLRCKRELWRVQY LSRIRNAAR+LLTLDEKNPRRIFEGEALLRRM+RYG L+E+QNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHHARVLIRQRHI VGRQLVNIPSF+VRV+SQKH++FSLTSP
Sbjct:    1 MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSP 165          
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS91_ARATH (40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 2.712e-80
Identity = 145/165 (87.88%), Postives = 160/165 (96.97%), Query Frame = 1
Query:   91 MVHISFYRNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585
            MVH+ +YRNYGKTFK PRRPYEKERLD+EL+LVGEYGLR KRELWRVQY+LSRIRNAARDLLTLDEK+PRRIFEGEALLRRM+RYG L+ESQNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHH+RVLIRQRHI VG+QLVNIPSF+VR+DSQKHI+F+LTSP
Sbjct:    1 MVHVCYYRNYGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSP 165          
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS9_PODAN (40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 5.682e-62
Identity = 116/158 (73.42%), Postives = 139/158 (87.97%), Query Frame = 1
Query:  112 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585
            R+Y KT K PRRP+E  RLD+EL+LVGEYGLR KRE+WRV   LS+IR AAR+LLTLDEK+P+R+FEG AL+RR+ R G L+ES+ KLDYVLAL  E+FLERRLQTLV+K G+AKSIHHARVLIRQRHI VG+Q+VN+PSFVVR+DSQKHI+F+LTSP
Sbjct:    4 RSYSKTAKVPRRPFEAARLDSELKLVGEYGLRNKREVWRVLLTLSKIRRAARELLTLDEKDPKRLFEGNALIRRLVRVGVLDESRMKLDYVLALKAEDFLERRLQTLVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSFVVRLDSQKHIDFALTSP 161          
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS9_DICDI (40S ribosomal protein S9 OS=Dictyostelium discoideum GN=rps9 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 3.683e-61
Identity = 110/157 (70.06%), Postives = 139/157 (88.54%), Query Frame = 1
Query:  115 NYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585
            NY KT   PRRP+EKER+DAEL++VGE+GL+ K E+WRVQYAL++IR AAR+LL LDEK+P+RIFEG ALLRR+H+ G +EES+NKLDY+L L V++F+ERRLQTLVFK+G+AKSIHHARVLI+ RHI VG+QLVN+PSF+VRV+SQKH+  + TSP
Sbjct:    4 NYSKTSHTPRRPFEKERIDAELKVVGEFGLKNKNEVWRVQYALAKIRKAARELLVLDEKDPKRIFEGSALLRRLHKLGVMEESKNKLDYILNLKVQDFMERRLQTLVFKNGLAKSIHHARVLIKGRHIRVGKQLVNVPSFLVRVESQKHLGLASTSP 160          
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS9_DROME (40S ribosomal protein S9 OS=Drosophila melanogaster GN=RpS9 PE=1 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 6.945e-60
Identity = 112/156 (71.79%), Postives = 136/156 (87.18%), Query Frame = 1
Query:  118 YGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585
            + KT+  PRRPYEK RLD EL+++GEYGLR KRE+WRV+YAL++IR AAR+LLTLDEK+ +R+F+G ALLRR+ R G L+ES+ KLDYVL L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHI V +Q+VNIPSFVVR+DSQKHI+FSL SP
Sbjct:   10 FSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFVVRLDSQKHIDFSLKSP 165          
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS9_RAT (40S ribosomal protein S9 OS=Rattus norvegicus GN=Rps9 PE=1 SV=4)

HSP 1 Score: 228.409 bits (581), Expect = 2.021e-59
Identity = 110/154 (71.43%), Postives = 134/154 (87.01%), Query Frame = 1
Query:  124 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHI V +Q+VNIPSF+VR+DSQKHI+FSL SP
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSP 164          
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS9_PAPAN (40S ribosomal protein S9 OS=Papio anubis GN=RPS9 PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.021e-59
Identity = 110/154 (71.43%), Postives = 134/154 (87.01%), Query Frame = 1
Query:  124 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHI V +Q+VNIPSF+VR+DSQKHI+FSL SP
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSP 164          
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS9_MOUSE (40S ribosomal protein S9 OS=Mus musculus GN=Rps9 PE=2 SV=3)

HSP 1 Score: 228.409 bits (581), Expect = 2.021e-59
Identity = 110/154 (71.43%), Postives = 134/154 (87.01%), Query Frame = 1
Query:  124 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHI V +Q+VNIPSF+VR+DSQKHI+FSL SP
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSP 164          
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS9_HUMAN (40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 PE=1 SV=3)

HSP 1 Score: 228.409 bits (581), Expect = 2.021e-59
Identity = 110/154 (71.43%), Postives = 134/154 (87.01%), Query Frame = 1
Query:  124 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHI V +Q+VNIPSF+VR+DSQKHI+FSL SP
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSP 164          
BLAST of CX305191 vs. ExPASy Swiss-Prot
Match: RS9_BOVIN (40S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.021e-59
Identity = 110/154 (71.43%), Postives = 134/154 (87.01%), Query Frame = 1
Query:  124 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIXVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHI V +Q+VNIPSF+VR+DSQKHI+FSL SP
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSP 164          
The following BLAST results are available for this feature:
BLAST of CX305191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS92_ARATH7.626e-8390.3040S ribosomal protein S9-2 OS=Arabidopsis thaliana... [more]
RS91_ARATH2.712e-8087.8840S ribosomal protein S9-1 OS=Arabidopsis thaliana... [more]
RS9_PODAN5.682e-6273.4240S ribosomal protein S9 OS=Podospora anserina GN=... [more]
RS9_DICDI3.683e-6170.0640S ribosomal protein S9 OS=Dictyostelium discoide... [more]
RS9_DROME6.945e-6071.7940S ribosomal protein S9 OS=Drosophila melanogaste... [more]
RS9_RAT2.021e-5971.4340S ribosomal protein S9 OS=Rattus norvegicus GN=R... [more]
RS9_PAPAN2.021e-5971.4340S ribosomal protein S9 OS=Papio anubis GN=RPS9 P... [more]
RS9_MOUSE2.021e-5971.4340S ribosomal protein S9 OS=Mus musculus GN=Rps9 P... [more]
RS9_HUMAN2.021e-5971.4340S ribosomal protein S9 OS=Homo sapiens GN=RPS9 P... [more]
RS9_BOVIN2.021e-5971.4340S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC18002C10Rv Drought1 Citrus clementina cDNA clone C18002C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305191 ID=CX305191; Name=CX305191; organism=Citrus clementina; type=EST; length=586bp
GCGGGGAGACACGGCCTCTTTACGCCATTTGCTTAGGCTTTTTCGAAGAT
CGCAGAGAGAGAGTGAGGGTAGCACCAGCGGCGCGCAAAGATGGTGCACA
TTTCATTCTACCGCAACTATGGGAAAACCTTCAAGAAGCCAAGACGTCCC
TATGAGAAGGAGCGATTGGATGCTGAGTTGAGACTTGTGGGAGAGTATGG
GCTTCGCTGCAAGAGGGAACTCTGGAGGGTTCAATATGCACTGAGCCGCA
TCCGAAATGCTGCGAGGGATCTTCTCACTCTCGATGAGAAGAACCCACGT
CGTATTTTCGAGGGTGAGGCTCTTCTCAGGAGGATGCACAGGTACGGCTT
CTTGGAAGAGAGCCAGAACAAGCTTGATTATGTGTTGGCCCTCACTGTGG
AGAACTTTCTTGAGCGTCGTCTCCAGACCCTTGTGTTCAAGAGTGGCATG
GCTAAGTCAATTCACCATGCTCGAGTGCTCATCAGGCAGAGGCACATTAN
GGTTGGAAGGCAGCTTGTCAACATTCCCTCATTTGTAGTGAGGGTTGATT
CCCAGAAGCACATTGAATTCTCACTGACAAGTCCAT
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