CX305208

Overview
NameCX305208
Unique NameCX305208
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length613
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305208 vs. ExPASy Swiss-Prot
Match: RS11_EUPES (40S ribosomal protein S11 OS=Euphorbia esula GN=RPS11 PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 3.998e-77
Identity = 139/159 (87.42%), Postives = 145/159 (91.19%), Query Frame = 2
Query:   95 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMDRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 571
            MAEQTEKAFLKQPKVFL+S             NRFWKSIGLGFKTPREAI+GTYIDKKCPFTGTVSIRGRILAGTCHSAKM+RTIIVRRNYLHF+KKYQRYEKRHSNIPAH+SPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGG KKAFTA+
Sbjct:    1 MAEQTEKAFLKQPKVFLASKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIDGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGVKKAFTAI 159          
BLAST of CX305208 vs. ExPASy Swiss-Prot
Match: RS11_SOYBN (40S ribosomal protein S11 OS=Glycine max GN=RPS11 PE=2 SV=2)

HSP 1 Score: 282.722 bits (722), Expect = 9.848e-76
Identity = 139/159 (87.42%), Postives = 142/159 (89.31%), Query Frame = 2
Query:   95 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMDRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 571
            MAEQTEKAFLKQPKVFLS+             NRFWKSIGLGFKTPREAIEGTYIDKKCPFTG VSIRGRILAGTCHSAKM+RTIIVRRNYLHF+KKYQRYEKRHSNIPAHISP FRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSS GAKKAFT M
Sbjct:    1 MAEQTEKAFLKQPKVFLSTKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGM 159          
BLAST of CX305208 vs. ExPASy Swiss-Prot
Match: RS11_MAIZE (40S ribosomal protein S11 OS=Zea mays GN=RPS11 PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.286e-75
Identity = 138/158 (87.34%), Postives = 142/158 (89.87%), Query Frame = 2
Query:   95 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMDRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTA 568
            MAEQTEKAFLKQPKVFLSS             NRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRI+AGTCHSAKM+RTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNV+KVIPAGS+   KKAFTA
Sbjct:    1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVVKVIPAGSAAAGKKAFTA 158          
BLAST of CX305208 vs. ExPASy Swiss-Prot
Match: RS113_ARATH (40S ribosomal protein S11-3 OS=Arabidopsis thaliana GN=RPS11C PE=2 SV=2)

HSP 1 Score: 275.018 bits (702), Expect = 2.053e-73
Identity = 134/159 (84.28%), Postives = 139/159 (87.42%), Query Frame = 2
Query:   95 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMDRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 571
            MAEQTEKAFLKQPKVFLSS             NRFWK+IGLGFKTPREAI+G YID KCPFTGTVSIRGRILAGTCHSAKM RTIIVRRNYLHFVKKYQRYEKRHSNIPAH+SPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAG+S   KKAFT +
Sbjct:    1 MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159          
BLAST of CX305208 vs. ExPASy Swiss-Prot
Match: RS111_ARATH (40S ribosomal protein S11-1 OS=Arabidopsis thaliana GN=RPS11A PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 5.974e-73
Identity = 134/160 (83.75%), Postives = 140/160 (87.50%), Query Frame = 2
Query:   95 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMDRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGG-AKKAFTAM 571
            MAEQTEKAFLKQPKVFLSS             NRFWK+IGLGFKTPREAI+G Y+DKKCPFTGTVSIRGRILAGTCHSAKM RTIIVRR+YLHFVKKYQRYEKRHSNIPAH+SPCFRVKEGDH+IIGQCRPLSKTVRFNVLKVIPAGSS    KKAFT M
Sbjct:    1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160          
BLAST of CX305208 vs. ExPASy Swiss-Prot
Match: RS112_ARATH (40S ribosomal protein S11-2 OS=Arabidopsis thaliana GN=RPS11B PE=2 SV=2)

HSP 1 Score: 271.166 bits (692), Expect = 2.965e-72
Identity = 133/159 (83.65%), Postives = 139/159 (87.42%), Query Frame = 2
Query:   95 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMDRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 571
            MAEQTEKAFLKQPKVFLSS             NRFWK+IGLGFKTPREAIEGTYID+KCPFTGTVSIRGRIL+GTCHSAKM RTIIVRR+YLHFVKKY+RYEKRHSNIPAH+SPCFRVKEGD V IGQCRPLSKTVRFNVLKVIPAGSS   KKAFT M
Sbjct:    1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCPFTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKEGDRVTIGQCRPLSKTVRFNVLKVIPAGSSSIGKKAFTGM 159          
BLAST of CX305208 vs. ExPASy Swiss-Prot
Match: RS11_DUNTE (40S ribosomal protein S11 OS=Dunaliella tertiolecta GN=RPS11 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.610e-52
Identity = 104/158 (65.82%), Postives = 124/158 (78.48%), Query Frame = 2
Query:   95 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMDRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP-AGSSGGAKKAFT 565
            MAEQTEKAF KQ  V                 +RF+K++GL FKTP+EAI+G Y+DKKCPFTG VSIRGRIL G   S+KM RTIIVRR+YLHF+ KY RYEKRH+NIPAH+SPCFRV++GD VIIGQCRPLSKT+RFNVL+VIP AG++G  KK+F+
Sbjct:    1 MAEQTEKAFQKQVGV-TGCFKSKEKKAPGKSGHRFFKNVGLNFKTPKEAIDGNYVDKKCPFTGNVSIRGRILTGVVKSSKMMRTIIVRRDYLHFIPKYARYEKRHTNIPAHVSPCFRVRDGDTVIIGQCRPLSKTIRFNVLRVIPQAGATG--KKSFS 155          
BLAST of CX305208 vs. ExPASy Swiss-Prot
Match: RS11_XENLA (40S ribosomal protein S11 OS=Xenopus laevis GN=rps11 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.935e-47
Identity = 91/154 (59.09%), Postives = 113/154 (73.38%), Query Frame = 2
Query:  104 QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMDRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 562
            QTE+A+ KQP +F +               R+++S+GLGFKTPREAI+GTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:    5 QTERAYQKQPTIFQNKKRVLEGETGKEKLPRYYRSVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQVGDTVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155          
BLAST of CX305208 vs. ExPASy Swiss-Prot
Match: RS11_RAT (40S ribosomal protein S11 OS=Rattus norvegicus GN=Rps11 PE=1 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 2.528e-47
Identity = 92/154 (59.74%), Postives = 113/154 (73.38%), Query Frame = 2
Query:  104 QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMDRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 562
            QTE+A+ KQP +F +               R++K+IGLGFKTP+EAIEGTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:    5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155          
BLAST of CX305208 vs. ExPASy Swiss-Prot
Match: RS11_MOUSE (40S ribosomal protein S11 OS=Mus musculus GN=Rps11 PE=2 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 2.528e-47
Identity = 92/154 (59.74%), Postives = 113/154 (73.38%), Query Frame = 2
Query:  104 QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMDRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 562
            QTE+A+ KQP +F +               R++K+IGLGFKTP+EAIEGTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:    5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155          
The following BLAST results are available for this feature:
BLAST of CX305208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RS11_EUPES3.998e-7787.4240S ribosomal protein S11 OS=Euphorbia esula GN=RP... [more]
RS11_SOYBN9.848e-7687.4240S ribosomal protein S11 OS=Glycine max GN=RPS11 ... [more]
RS11_MAIZE1.286e-7587.3440S ribosomal protein S11 OS=Zea mays GN=RPS11 PE=... [more]
RS113_ARATH2.053e-7384.2840S ribosomal protein S11-3 OS=Arabidopsis thalian... [more]
RS111_ARATH5.974e-7383.7540S ribosomal protein S11-1 OS=Arabidopsis thalian... [more]
RS112_ARATH2.965e-7283.6540S ribosomal protein S11-2 OS=Arabidopsis thalian... [more]
RS11_DUNTE2.610e-5265.8240S ribosomal protein S11 OS=Dunaliella tertiolect... [more]
RS11_XENLA1.935e-4759.0940S ribosomal protein S11 OS=Xenopus laevis GN=rps... [more]
RS11_RAT2.528e-4759.7440S ribosomal protein S11 OS=Rattus norvegicus GN=... [more]
RS11_MOUSE2.528e-4759.7440S ribosomal protein S11 OS=Mus musculus GN=Rps11... [more]

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Properties
Property NameValue
Genbank descriptionC18002E07Rv Drought1 Citrus clementina cDNA clone C18002E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305208 ID=CX305208; Name=CX305208; organism=Citrus clementina; type=EST; length=613bp
GCGGGGGCGCTTGATTTAGGGTTTTCTGCATTGTGTTAGCCACCTCCGCC
CAGTGCGTTCATCATCCTCAACAACTCAGCCCCGAAATCCAGCCATGGCG
GAGCAGACCGAGAAGGCGTTTTTGAAGCAGCCCAAGGTGTTTCTCAGCTC
GAAGAAGGCAGGAAAAGGAAAGAGGCCAGGAAAGGGAGGGAATCGATTCT
GGAAGAGCATAGGCTTGGGATTCAAGACTCCCAGAGAGGCAATTGAAGGG
ACTTACATTGATAAGAAGTGTCCGTTCACCGGCACTGTTTCCATCAGGGG
TCGTATCCTTGCTGGTACTTGCCACAGTGCTAAGATGGACAGAACCATCA
TCGTTAGGCGTAACTACCTTCACTTTGTGAAGAAATATCAGAGGTATGAG
AAGAGGCACTCTAACATTCCAGCACACATCTCACCTTGTTTCCGTGTGAA
AGAGGGAGACCATGTTATCATTGGCCAGTGCAGGCCTTTGTCAAAGACGG
TCAGGTTTAATGTCTTGAAAGTGATACCTGCTGGGTCTTCTGGTGGTGCA
AAGAAGGCATTCACGGCGATGTGAGTTGGAGTCGGCTGTTTCCAACATTA
AATTTTTGCTACT
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