CX305225

Overview
NameCX305225
Unique NameCX305225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX305225_ssr139 microsatellite CX305225_ssr139:139..150. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9835 contig Ccv1_Contig9835:153..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305225 vs. ExPASy Swiss-Prot
Match: PR4A_TOBAC (Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.864e-47
Identity = 84/105 (80.00%), Postives = 91/105 (86.67%), Query Frame = -2
Query:  211 IGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 525
            I WDL AASAFCATWDA+KPLAWRQKYGWTAFC   GP GQ +CGRCLRVTN+GTG Q  VRIVDQC+NGGLDLD  VF +LDTNG+GYQQG LTV+YEFVNCND
Sbjct:   43 INWDLRAASAFCATWDADKPLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQTTVRIVDQCSNGGLDLDVNVFNQLDTNGVGYQQGHLTVNYEFVNCND 147          
BLAST of CX305225 vs. ExPASy Swiss-Prot
Match: PR4B_TOBAC (Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.208e-46
Identity = 83/105 (79.05%), Postives = 90/105 (85.71%), Query Frame = -2
Query:  211 IGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 525
            I WDL AASAFCATWDA+KPLAWRQKYGWTAFC   GP GQ +CGRCLRVTN+GTG Q  VRIVDQC+NGGLDLD  VF +LDTNG+GYQQG L V+YEFVNCND
Sbjct:   43 INWDLRAASAFCATWDADKPLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQATVRIVDQCSNGGLDLDVNVFNQLDTNGLGYQQGHLIVNYEFVNCND 147          
BLAST of CX305225 vs. ExPASy Swiss-Prot
Match: PRP2_SOLLC (Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.637e-43
Identity = 75/103 (72.82%), Postives = 86/103 (83.50%), Query Frame = -2
Query:  217 IGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNC 525
            I WDL  AS +CATWDA+KPL WR++YGWTAFC   GP GQA+CGRCLRVTN+GTG Q+ VRIVDQC NGGLDLD  VF +LDTNG+GYQ+G L V+YEFVNC
Sbjct:   41 INWDLRTASVYCATWDADKPLEWRRRYGWTAFCGPAGPTGQASCGRCLRVTNTGTGTQETVRIVDQCRNGGLDLDVNVFNRLDTNGLGYQRGNLNVNYEFVNC 143          
BLAST of CX305225 vs. ExPASy Swiss-Prot
Match: WIN2_SOLTU (Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.405e-41
Identity = 72/105 (68.57%), Postives = 87/105 (82.86%), Query Frame = -2
Query:  211 IGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 525
            +GWDL A SA+C+TWDANKP AWR KYGWTAFC   GP G+ +CG+CLRVTN+ TGAQ  VRIVDQC+NGGLDLD  VF+++DT+G+G QQG L V+Y+FVNC D
Sbjct:   94 VGWDLNAVSAYCSTWDANKPYAWRSKYGWTAFCGPVGPRGRDSCGKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDINVFQQIDTDGVGNQQGHLIVNYQFVNCGD 198          
BLAST of CX305225 vs. ExPASy Swiss-Prot
Match: BARW_HORVU (Barwin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 9.906e-41
Identity = 78/109 (71.56%), Postives = 87/109 (79.82%), Query Frame = -2
Query:  211 QIGWDL--TAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 528
            Q  WDL   A SA+CATWDA+KPL+WR KYGWTAFC   GP GQAACG+CLRVTN  TGAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:   17 QNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 125          
BLAST of CX305225 vs. ExPASy Swiss-Prot
Match: HEVE_HEVBR (Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 1.690e-40
Identity = 70/104 (67.31%), Postives = 88/104 (84.62%), Query Frame = -2
Query:  211 GWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 522
            GWDL AASA+C+TWDANKP +WR KYGWTAFC   G  GQ++CG+CL VTN+GTGA+  VRIVDQC+NGGLDLD  VF++LDT+G GY++G +TV+Y+FV+C D
Sbjct:   86 GWDLNAASAYCSTWDANKPYSWRSKYGWTAFCGPVGAHGQSSCGKCLSVTNTGTGAKTTVRIVDQCSNGGLDLDVNVFRQLDTDGKGYERGHITVNYQFVDCGD 189          
BLAST of CX305225 vs. ExPASy Swiss-Prot
Match: WIN1_SOLTU (Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 6.421e-40
Identity = 70/105 (66.67%), Postives = 87/105 (82.86%), Query Frame = -2
Query:  211 IGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 525
            +GWDL A SA+C+TWDANKPL+WR+KYGWTAFC   GP G+ +CG+CLRVTN+ TGAQ  VRIVDQC+NGGLDLD  VF+++DT+G G  QG L V+Y+FV+C D
Sbjct:   95 VGWDLNAVSAYCSTWDANKPLSWRKKYGWTAFCGPVGPRGRDSCGKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDVNVFRQIDTDGNGNHQGHLIVNYQFVDCGD 199          
BLAST of CX305225 vs. ExPASy Swiss-Prot
Match: WHW2_WHEAT (Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 8.386e-40
Identity = 77/109 (70.64%), Postives = 86/109 (78.90%), Query Frame = -2
Query:  211 QIGWDL--TAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 528
            Q  WDL   A SA+CATWDA+KPL+WR KYGWTAFC   G  GQAACG+CLRVTN  TGAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:   40 QNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGAHGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 148          
BLAST of CX305225 vs. ExPASy Swiss-Prot
Match: PR4_PRUPE (Pathogenesis-related protein PR-4 (Fragment) OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 3.187e-39
Identity = 71/105 (67.62%), Postives = 83/105 (79.05%), Query Frame = -2
Query:  211 IGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 525
            I WDL  AS FCATWDA+KPL+WR KYGWTAFC   GP GQ +CG+CL VTN+GTGA+  VRIVDQC+NGGLDLD  VF ++DTNG G  QG L V+Y+FV+C D
Sbjct:    3 INWDLRTASVFCATWDADKPLSWRSKYGWTAFCGPVGPTGQDSCGKCLLVTNTGTGAKVTVRIVDQCSNGGLDLDVNVFNQIDTNGQGNAQGHLIVNYDFVDCGD 107          
BLAST of CX305225 vs. ExPASy Swiss-Prot
Match: WHW1_WHEAT (Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 5.435e-39
Identity = 75/109 (68.81%), Postives = 86/109 (78.90%), Query Frame = -2
Query:  211 QIGWDL--TAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 528
            Q  WDL   A SA+CATWDA+KPL+WR KYGWTAFC   G  GQA+CG+CL+VTN  TGAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:   38 QNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGAHGQASCGKCLQVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 146          
The following BLAST results are available for this feature:
BLAST of CX305225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PR4A_TOBAC1.864e-4780.00Pathogenesis-related protein PR-4A OS=Nicotiana ta... [more]
PR4B_TOBAC1.208e-4679.05Pathogenesis-related protein PR-4B OS=Nicotiana ta... [more]
PRP2_SOLLC3.637e-4372.82Pathogenesis-related protein P2 OS=Solanum lycoper... [more]
WIN2_SOLTU3.405e-4168.57Wound-induced protein WIN2 OS=Solanum tuberosum GN... [more]
BARW_HORVU9.906e-4171.56Barwin OS=Hordeum vulgare PE=1 SV=1[more]
HEVE_HEVBR1.690e-4067.31Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2[more]
WIN1_SOLTU6.421e-4066.67Wound-induced protein WIN1 OS=Solanum tuberosum GN... [more]
WHW2_WHEAT8.386e-4070.64Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1[more]
PR4_PRUPE3.187e-3967.62Pathogenesis-related protein PR-4 (Fragment) OS=Pr... [more]
WHW1_WHEAT5.435e-3968.81Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC18002G02Rv Drought1 Citrus clementina cDNA clone C18002G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305225 ID=CX305225; Name=CX305225; organism=Citrus clementina; type=EST; length=529bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGGGATAAAAAAAGGAAACT
TTTATTACATAACTGTAGTGCCCATGAGCACTTCTTGATACTTCATCAGA
AGTTTTATTTTTATTTATGAACTAAGTATATAGAGGGATAATTAATTAAT
AAATTAACCCTATTACAGCATTAAGCTTCGATCGATCATGGAATTATAGA
TGGTGCTTTAATCATTGCAGTTCACAAACTCGTAGCTGACAGTAAGGAAG
CCTTGTTGATAGCCTATTCCATTGGTGTCCAATTTCTTGAACACTCCTTC
GTCCAAATCTAAGCCTCCATTGGCACACTGATCAACAATTCTCACAATTT
GCTGGGCTCCTGTACCACTGTTTGTGACCCTTAAGCACCTGCCACAAGCA
GCTTGTCCAATGGGTCCGCCCGAATGACAGAAAGCAGTCCAGCCATATTT
CTGGCGCCAGGCCAAGGGCTTGTTGGCATCCCATGTTGCGCAGAAAGCGC
TCGCTGCCGTCAAGTCCCATCCAATTTGC
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