CX305226

Overview
NameCX305226
Unique NameCX305226
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length622
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10111 contig Ccv1_Contig10111:441..1062. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305226 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.658e-26
Identity = 59/132 (44.70%), Postives = 83/132 (62.88%), Query Frame = 1
Query:   70 CPLDVIQLPSAIQWGKKLILSPYDNST-IVREPTDLNLRFVGLLSGSKQCNELPLWKVDNYDASSGRWFITTGGLDGHPGAETLLNWFKLEKTNLPGAYKIVHCPSVCESCVKLCSSVGRFSFEDGVRRLVL 462
            CP  V+Q  S +  G  +I S  D+   +VR  TD+N+ FV +    + C+   +W++DNYD S+G+W++TT G+ G PG  TL +WFK+EK  + G YK   CPSVC+SC  LCS +GR S +DG  RL L
Sbjct:   69 CPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPIRD--RLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVLG-YKFRFCPSVCDSCTTLCSDIGRHSDDDGQIRLAL 197          
BLAST of CX305226 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 1.595e-20
Identity = 52/138 (37.68%), Postives = 78/138 (56.52%), Query Frame = 1
Query:   70 CPLDVIQLPSAIQWGKKLILSPYD-NSTIVREPTDLNLRFVGLLSGSKQCNELPLWKVDNYDASSGRWFITTGGLDGHPGAETLLNWFKLEKTNLPGAYKIVHCPSVCESCVKLCSSVGRFSFEDGVRRLVLVRDDEP 480
            CP  V+Q    +   + L   P +    +VR  TDLN+ F   +    +     +W++D YD S+G++F+T GG+ G+PG ET+ +WFK+E+    G YK+V CP+VC SC   C  VG +  + G RRL L   D+P
Sbjct:   76 CPPRVVQTRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFSAFMPC--RWTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCGSGFYKLVFCPTVCGSCKVKCGDVGIYIDQKGRRRLAL--SDKP 209          
BLAST of CX305226 vs. ExPASy Swiss-Prot
Match: LSPI_CARPA (Latex serine proteinase inhibitor OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.001e-14
Identity = 55/160 (34.38%), Postives = 79/160 (49.38%), Query Frame = 1
Query:    1 YIVSAIWXXXXXXXXXXXXXXXY-CPLDVIQLPSAIQWGKKLILSPYDN--STIVREPTDLNLRFVGLLSGSKQCNELPLWKVDNYDASSGRWFITTGGLDGHPGAETLLNWFKLEKTNLPGAYKIVHCPSVCESCVKLCSSVGRFSFEDGVRRLVLVRD 471
            ++VSAIW                 CPL V+Q P     G+ +I S   N    IV E  DLN++F   ++    CNE   WKVD +    G W +T GG  G+ G E+  + FK++K  LP +YK   CPS   + +  C++V  F  +  +RRL+L  D
Sbjct:   21 FVVSAIWGAGGGGLTVYGPGNKKKCPLSVVQDP--FDNGEPIIFSAIKNVKDNIVFESVDLNVKFNITIN----CNETTAWKVDRFPGVIG-WTVTLGGEKGYHGFESTHSMFKIKKAGLPFSYKFHFCPSYPRTRLIPCNNVDIFFDKYRIRRLILTND 173          
The following BLAST results are available for this feature:
BLAST of CX305226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ASP_THECC5.658e-2644.7021 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU1.595e-2037.68Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
LSPI_CARPA1.001e-1434.38Latex serine proteinase inhibitor OS=Carica papaya... [more]
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Properties
Property NameValue
Genbank descriptionC18002G03Rv Drought1 Citrus clementina cDNA clone C18002G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305226 ID=CX305226; Name=CX305226; organism=Citrus clementina; type=EST; length=622bp
TACATAGTCTCAGCCATCTGGGGAGCCGGCGGCGGTGGAGTTAGCCTACA
CGGAGGCAGAAACGGATACTGTCCGTTGGATGTTATCCAATTACCTTCTG
CTATCCAATGGGGAAAGAAATTAATACTGTCACCATATGACAATTCTACA
ATTGTCAGAGAACCCACTGATCTCAACTTGAGATTCGTAGGGTTACTATC
TGGAAGTAAGCAATGTAACGAGCTACCGTTGTGGAAAGTTGATAACTATG
ACGCTTCATCAGGCAGATGGTTTATAACAACCGGGGGACTTGATGGTCAC
CCTGGAGCTGAAACGTTGCTAAATTGGTTTAAGCTTGAGAAAACTAATCT
ACCAGGTGCATACAAAATTGTTCATTGTCCATCTGTTTGCGAGTCTTGCG
TCAAACTCTGCAGCAGCGTTGGCCGCTTTTCGTTTGAGGATGGCGTTCGA
CGTCTGGTTCTGGTTCGTGATGATGAGCCGGCTTTTCCTGTTGTGTTAAT
TCCAGCTAGAGAAAGATCGACGTCTGTGTAATCAATGTACCCTAACCGGC
TAGCAGTATTATTATTCTAAATAACGGACCAGGCTAGCTGCTCTTTAATC
TCTAGGATTAATAAAATTATGA
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