CX305227

Overview
NameCX305227
Unique NameCX305227
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length401
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ADF2_ARATH (Actin-depolymerizing factor 2 OS=Arabidopsis thaliana GN=ADF2 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.519e-29
Identity = 60/70 (85.71%), Postives = 65/70 (92.86%), Query Frame = -1
Query:  192 YDFDFVTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTRSN 401
            YDFDFVT +NCQKSKI FIAWSPD +KVR KMIYASSKDRFKRELDGIQV+LQATDPTEMGLDV K+R+N
Sbjct:   68 YDFDFVTAENCQKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFKSRTN 137          
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ADF7_ORYSJ (Actin-depolymerizing factor 7 OS=Oryza sativa subsp. japonica GN=ADF7 PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 2.979e-28
Identity = 57/70 (81.43%), Postives = 67/70 (95.71%), Query Frame = -1
Query:  192 YDFDFVTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTRSN 401
            +D+DFVT++NCQKSKI FIAWSPD S+VRSKMIYASSKDRFKRELDGIQV+LQATDPTE+GLDV++ R+N
Sbjct:   70 FDYDFVTEENCQKSKIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVELQATDPTEVGLDVIRGRAN 139          
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ADF4_ARATH (Actin-depolymerizing factor 4 OS=Arabidopsis thaliana GN=ADF4 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 5.081e-28
Identity = 59/70 (84.29%), Postives = 64/70 (91.43%), Query Frame = -1
Query:  192 YDFDFVTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTRSN 401
            YDFDFVT +NCQKSKI FIAW PD +KVRSKMIYASSKDRFKRELDGIQV+LQATDPTEM LDV+K+R N
Sbjct:   70 YDFDFVTAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVLKSRVN 139          
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ADF6_ORYSJ (Actin-depolymerizing factor 6 OS=Oryza sativa subsp. japonica GN=ADF6 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 1.132e-27
Identity = 55/69 (79.71%), Postives = 65/69 (94.20%), Query Frame = -1
Query:  195 YDFDFVTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTRS 401
            +DFDFVTD+NCQKSKI FI+WSPD SKVRSKM+YASSKDRFKRELDGIQV+LQATDP+EM +D++K R+
Sbjct:   70 FDFDFVTDENCQKSKIFFISWSPDTSKVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVKARA 138          
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ADF1_ARATH (Actin-depolymerizing factor 1 OS=Arabidopsis thaliana GN=ADF1 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.132e-27
Identity = 58/70 (82.86%), Postives = 64/70 (91.43%), Query Frame = -1
Query:  192 YDFDFVTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTRSN 401
            YDFDFVT +NCQKSKI FIAW PD +KVRSKMIYASSKDRFKRELDGIQV+LQATDPTEM LDV ++R+N
Sbjct:   70 YDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFRSRAN 139          
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ADF1_PETHY (Actin-depolymerizing factor 1 OS=Petunia hybrida GN=ADF1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.522e-27
Identity = 56/70 (80.00%), Postives = 65/70 (92.86%), Query Frame = -1
Query:  192 YDFDFVTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTRSN 401
            YDFDFVT +NCQKS+I FIAW PD ++VRSKMIYASSKDRFKRELDGIQV+LQA DPTEMGLDV+++R+N
Sbjct:   70 YDFDFVTAENCQKSRIFFIAWCPDTARVRSKMIYASSKDRFKRELDGIQVELQACDPTEMGLDVIQSRAN 139          
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ADF1_ORYSJ (Actin-depolymerizing factor 1 OS=Oryza sativa subsp. japonica GN=ADF1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.301e-27
Identity = 53/69 (76.81%), Postives = 66/69 (95.65%), Query Frame = -1
Query:  195 YDFDFVTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTRS 401
            +DFDFVTD+NCQKSKI FI+W+PD S+VRSKM+YASSKDRFKRELDGIQV+LQATDP+EM +D++K+R+
Sbjct:   70 FDFDFVTDENCQKSKIFFISWAPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVKSRA 138          
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ADF_LILLO (Actin-depolymerizing factor OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.618e-27
Identity = 53/69 (76.81%), Postives = 65/69 (94.20%), Query Frame = -1
Query:  195 YDFDFVTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTRS 401
            +DFDFVTD+NCQKSKI FI+WSPD S+VRSKM+YAS+KDRFKRELDGIQV+LQATDP+EM +D++K R+
Sbjct:   70 FDFDFVTDENCQKSKIFFISWSPDTSRVRSKMLYASTKDRFKRELDGIQVELQATDPSEMSMDIIKARA 138          
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ADF7_ARATH (Actin-depolymerizing factor 7 OS=Arabidopsis thaliana GN=ADF7 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.618e-27
Identity = 53/69 (76.81%), Postives = 64/69 (92.75%), Query Frame = -1
Query:  195 YDFDFVTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTRS 401
            +DFDF+TD+NCQKSKI FIAWSPD S+VR KM+YASSKDRFKRELDGIQV+LQATDP+EM  D++K+R+
Sbjct:   68 FDFDFITDENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKSRA 136          
BLAST of CX305227 vs. ExPASy Swiss-Prot
Match: ADF10_ARATH (Actin-depolymerizing factor 10 OS=Arabidopsis thaliana GN=ADF10 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.337e-27
Identity = 55/70 (78.57%), Postives = 63/70 (90.00%), Query Frame = -1
Query:  192 YDFDFVTDKNCQKSKIIFIAWSPDPSKVRSKMIYASSKDRFKRELDGIQVKLQATDPTEMGLDVMKTRSN 401
            YD+DF T +NCQKSKI FIAWSPD S+VRSKM+YASSKDRFKRELDGIQV+LQATDP+EM LD++K R N
Sbjct:   70 YDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSLDIIKGRVN 139          
The following BLAST results are available for this feature:
BLAST of CX305227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
ADF2_ARATH3.519e-2985.71Actin-depolymerizing factor 2 OS=Arabidopsis thali... [more]
ADF7_ORYSJ2.979e-2881.43Actin-depolymerizing factor 7 OS=Oryza sativa subs... [more]
ADF4_ARATH5.081e-2884.29Actin-depolymerizing factor 4 OS=Arabidopsis thali... [more]
ADF6_ORYSJ1.132e-2779.71Actin-depolymerizing factor 6 OS=Oryza sativa subs... [more]
ADF1_ARATH1.132e-2782.86Actin-depolymerizing factor 1 OS=Arabidopsis thali... [more]
ADF1_PETHY2.522e-2780.00Actin-depolymerizing factor 1 OS=Petunia hybrida G... [more]
ADF1_ORYSJ4.301e-2776.81Actin-depolymerizing factor 1 OS=Oryza sativa subs... [more]
ADF_LILLO5.618e-2776.81Actin-depolymerizing factor OS=Lilium longiflorum ... [more]
ADF7_ARATH5.618e-2776.81Actin-depolymerizing factor 7 OS=Arabidopsis thali... [more]
ADF10_ARATH7.337e-2778.57Actin-depolymerizing factor 10 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC18002G04Rv Drought1 Citrus clementina cDNA clone C18002G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305227 ID=CX305227; Name=CX305227; organism=Citrus clementina; type=EST; length=401bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTT
TTTTTTTTTTAAAAAAGTATTTAACTCCGACCACAAGCCGATAGCAAAGC
AAGTTATAAGTCATAAAAGATATAGACATTACATTTAAGTGAACAATATA
GTATGGGCTTTCCATTGCACCATAGGCAAGTCTAAAATTTAATTCGAACG
GGTTTTCATGACATCAAGACCCATTTCAGTAGGATCAGTAGCCTGCAACT
TTACCTGAATTCCATCCAATTCTCTTTTGAACCTGTCCTTGGAGCTAGCA
TAAATCATTTTGCTTCTCACCTTTGAGGGGTCGGGGGACCATGCAATGAA
AATAATCTTGCTCTTTTGGCAGTTCTTATCAGTCACAAAGTCAAAATCAT
A
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