CX305228

Overview
NameCX305228
Unique NameCX305228
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length580
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig860 contig Ccv1_Contig860:337..916. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305228 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.204e-21
Identity = 50/106 (47.17%), Postives = 70/106 (66.04%), Query Frame = -2
Query:  268 IVRESTDLNLRFSVLLSGRD-YCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGTYKIAHCPSVCESCVKHCNNVGR-SFEDGVRRLVL 579
            +VR STD+N+ F  +   RD  C+   +W++DNYD ++GKW++TT G+ G PG  TL +WFK+EK G     YK   CPSVC+SC   C+++GR S +DG  RL L
Sbjct:   97 VVRVSTDVNIEFVPI---RDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVL--GYKFRFCPSVCDSCTTLCSDIGRHSDDDGQIRLAL 197          
BLAST of CX305228 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 9.904e-19
Identity = 45/112 (40.18%), Postives = 68/112 (60.71%), Query Frame = -2
Query:  244 IVRESTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGTYKIAHCPSVCESCVKHCNNVGRSFEDGVRRLVLVRDDEPAF 579
            +VR STDLN+ FS  +  R       +W++D YD ++G++F+T GG+ G+PG ET+ +WFK+E+     G YK+  CP+VC SC   C +VG   +   RR + + D   AF
Sbjct:  104 VVRVSTDLNINFSAFMPCR--WTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCG-SGFYKLVFCPTVCGSCKVKCGDVGIYIDQKGRRRLALSDKPFAF 212          
BLAST of CX305228 vs. ExPASy Swiss-Prot
Match: LSPI_CARPA (Latex serine proteinase inhibitor OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.761e-13
Identity = 43/108 (39.81%), Postives = 62/108 (57.41%), Query Frame = -2
Query:  259 IVRESTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGTYKIAHCPSVCESCVKHCNNVGRSFED-GVRRLVLVRD 579
            IV ES DLN++F++ ++    CNE   WKVD +    G W +T GG  G+ G E+  + FK++K G  P +YK   CPS   + +  CNNV   F+   +RRL+L  D
Sbjct:   72 IVFESVDLNVKFNITIN----CNETTAWKVDRFPGVIG-WTVTLGGEKGYHGFESTHSMFKIKKAG-LPFSYKFHFCPSYPRTRLIPCNNVDIFFDKYRIRRLILTND 173          
The following BLAST results are available for this feature:
BLAST of CX305228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ASP_THECC6.204e-2147.1721 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU9.904e-1940.18Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
LSPI_CARPA4.761e-1339.81Latex serine proteinase inhibitor OS=Carica papaya... [more]
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Properties
Property NameValue
Genbank descriptionC18002G06Rv Drought1 Citrus clementina cDNA clone C18002G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305228 ID=CX305228; Name=CX305228; organism=Citrus clementina; type=EST; length=580bp
TTTTTTTTTTTTTTTTTTGAATCAAAACAAAGAACACTTGATTTCGATTT
TCATAAGGTATACACCAACAGTAGGATTTATTAACCCCGAAAGGATCACA
GGGTACTTATTCATAATTTTAATCCTAGAGATTAAAGAGCAGCTAGCCTG
ATCCGTTATTTAGAATAATAATACCGCTAGCTGGTTAGGGTACATTGATT
ACACAGACGTTGATCTTTCTGTAGCGGGAATTAACACAACAGGAAATGCC
GGCTCATCATCACGAACCAGAACCAGACGTCGAACGCCATCCTCAAACGA
ACGGCCAACGTTGTTGCAGTGTTTGACACAAGACTCGCAAACGGATGGAC
AATGAGCGATTTTGTATGTACCTGGAAAATTTCCAATTTTCTCAAGCTTA
AACCAATTTAGCAAAGTTTCAGCTCCAGGATGACCATCAAGTCCCCCGGT
TGTTATAAACCATTTGCCTGATGCAGCGTCATAATTATCAACTTTCCACA
ACGGTTGTTCGTTACAATAGTCACGTCCAGATAGCAACACTGAGAATCTC
AAGTTGAGATCAGTGGATTCTCGGACAATT
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