CX305231

Overview
NameCX305231
Unique NameCX305231
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length577
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12129 contig Ccv1_Contig12129:310..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305231 vs. ExPASy Swiss-Prot
Match: U497B_ARATH (UPF0497 membrane protein At2g37200 OS=Arabidopsis thaliana GN=At2g37200 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.077e-33
Identity = 67/88 (76.14%), Postives = 78/88 (88.64%), Query Frame = -2
Query:  250 DIYAILVRRSLRNDKVIRLFTVGDGITSTLTYAAACSSAGITVLISNDLNRCGINHCTRFETATAMAFISWFGTSPSFLLNFWSLASH 513
            D YA+LVRRSLRN  V++ FT+GDG+TSTLT+AAA +SAGITVLI NDL +C +NHCTRFETATAMAFISWF  SPSF+LNFWSLA+H
Sbjct:   94 DAYALLVRRSLRNHSVVQCFTIGDGVTSTLTFAAASASAGITVLI-NDLGQCNVNHCTRFETATAMAFISWFAVSPSFILNFWSLATH 180          
BLAST of CX305231 vs. ExPASy Swiss-Prot
Match: U4977_ARATH (UPF0497 membrane protein At2g28370 OS=Arabidopsis thaliana GN=At2g28370 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.031e-32
Identity = 64/108 (59.26%), Postives = 79/108 (73.15%), Query Frame = -2
Query:  253 FCYXXXXXXXXXXXXXXXXXLDIYAILVRRSLRNDKVIRLFTVGDGITSTLTYAAACSSAGITVLISNDLNRCGINHCTRFETATAMAFISWFGTSPSFLLNFWSLAS 576
            FCY                 +D+YAI+V+RSL+N +++ LF +GDG+TSTLT+AAAC+SAGITVLI NDLN C  NHC +FET+TA+AFISWF   PSFL NFWSLAS
Sbjct:   71 FCYLVAATGLQSLWSLALAMVDVYAIMVKRSLQNRRLVSLFAIGDGVTSTLTFAAACASAGITVLIDNDLNSCAQNHCVQFETSTALAFISWFAALPSFLFNFWSLAS 178          
BLAST of CX305231 vs. ExPASy Swiss-Prot
Match: U497L_ARATH (UPF0497 membrane protein At3g53850 OS=Arabidopsis thaliana GN=At3g53850 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.119e-14
Identity = 41/111 (36.94%), Postives = 60/111 (54.05%), Query Frame = -2
Query:  253 FCYXXXXXXXXXXXXXXXXXLDIYAILVRRSLRNDKVIRLFTVGDGITSTLTYAAACSSAGITVLISNDLNRCGINH---CTRFETATAMAFISWFGTSPSFLLNFWSLAS 576
            FCY                 LD+YA+  ++ L+N  ++ LF VGD +T+ L+ AAACSSAG+ VL   D+  C       C R+E A A++F++W   + S  + FW LAS
Sbjct:   43 FCYLIASMGLQLLWSFGLACLDVYALRGKKDLQNPILVSLFVVGDWVTAMLSLAAACSSAGVVVLYEKDIKYCNTQSQYPCLRYEVAVALSFVTWIQIAVSSHVTFWILAS 153          
BLAST of CX305231 vs. ExPASy Swiss-Prot
Match: U497J_ARATH (UPF0497 membrane protein At3g23200 OS=Arabidopsis thaliana GN=At3g23200 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.048e-12
Identity = 40/109 (36.70%), Postives = 58/109 (53.21%), Query Frame = -2
Query:  253 FCYXXXXXXXXXXXXXXXXXLDIYAILVRRSLRNDKVIRLFTVGDGITSTLTYAAACSSAGITVLISNDLNRCGIN-HCTRFETATAMAFISWFGTSPSFLLNFWSLAS 576
            FCY                 LD +A++ +++L +  ++ LF VGD +TSTL+ A A SSAGITVL   DL  C     C +++ + A+AF+ W   + S L   W LAS
Sbjct:   43 FCYLIAAMGLQVIWSFGLAILDTFALVRKKTLLSPVLVSLFVVGDWVTSTLSLAGASSSAGITVLYFGDLGSCSFEAECWKYQLSVALAFLCWITIAVSSLTTLWLLAS 151          
BLAST of CX305231 vs. ExPASy Swiss-Prot
Match: U497X_ARATH (UPF0497 membrane protein At5g02060 OS=Arabidopsis thaliana GN=At5g02060 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.200e-12
Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = -2
Query:  259 DIYAILVRRSLRNDKVIRLFTVGDGITSTLTYAAACSSAGITVLISNDLNRCGIN---HCTRFETATAMAFISWFGTSPSFLLNFWSL 513
            D+YAI  +  LR+  ++ LFTVGD +T+ L  AAACSSAG+TVL + D   C       C RF+ +  ++F +WF  + S    FW L
Sbjct:   64 DVYAIRRKSDLRSPILLSLFTVGDWVTALLALAAACSSAGVTVLFTKDTEFCRQQPALSCDRFQISVGLSFFNWFLAAISSHTMFWIL 151          
The following BLAST results are available for this feature:
BLAST of CX305231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
U497B_ARATH1.077e-3376.14UPF0497 membrane protein At2g37200 OS=Arabidopsis ... [more]
U4977_ARATH2.031e-3259.26UPF0497 membrane protein At2g28370 OS=Arabidopsis ... [more]
U497L_ARATH1.119e-1436.94UPF0497 membrane protein At3g53850 OS=Arabidopsis ... [more]
U497J_ARATH1.048e-1236.70UPF0497 membrane protein At3g23200 OS=Arabidopsis ... [more]
U497X_ARATH5.200e-1242.05UPF0497 membrane protein At5g02060 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionC18002G10Rv Drought1 Citrus clementina cDNA clone C18002G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305231 ID=CX305231; Name=CX305231; organism=Citrus clementina; type=EST; length=577bp
TTATTTTTTTTTTTTTTTTTTTTTTTTTTTATGTAAAGACGTTCCACGTT
TCATATGTTCGTTCATTGAAAAATATCCAGCACACTTTATATATGTACAC
AGTAGGTACAACTTAATCAATTCCATAGCTGGAGTTACATAGGAAAATCT
GTGCATCGAAAGTATGGTTCTTTGCTGATTATGAACTCTTGTCTACCCAA
TTCTTAGTGGTTCTTTGCTGATTATGGACTCTTGTCTACCCAATTCTTAG
TGGGAAGCCAATGACCAGAAATTCAGGAGAAAGGATGGTGAAGTACCAAA
CCAACTGATAAAAGCCATTGCCGTAGCAGTCTCAAACCTTGTACAGTGGT
TAATTCCACATCGGTTAAGATCATTGCTGATAAGAACTGTGATTCCTGCA
GATGAGCAGGCGGCTGCATATGTAAGGGTGGATGTGATCCCATCACCAAC
GGTGAATAAACGGATAACCTTATCATTCCGCAGACTTCTTCTCACCAGGA
TAGCATATATATCAAGCACTAACAGGGATAGACTCCACAAACTTTGCAAG
CCTAGAGCAAGAACTAGGTAGCAAAAA
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