CX305234

Overview
NameCX305234
Unique NameCX305234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length486
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305234 vs. ExPASy Swiss-Prot
Match: DIN1_RAPSA (Senescence-associated protein DIN1 OS=Raphanus sativus GN=DIN1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.504e-26
Identity = 53/82 (64.63%), Postives = 66/82 (80.49%), Query Frame = -1
Query:  238 GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDNIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAACRQNGLPTE 483
            GH + AINVPYMYRVGSGM KN  F+ +VS+ FRKHD II+GC+SG+RS+MA+T+LL AGF G+TDIAGG+    +N LP E
Sbjct:  101 GHPSRAINVPYMYRVGSGMVKNPSFLRQVSSHFRKHDEIIIGCESGERSLMASTELLTAGFTGVTDIAGGYVPWTENELPVE 182          
BLAST of CX305234 vs. ExPASy Swiss-Prot
Match: STR16_ARATH (Thiosulfate sulfurtransferase OS=Arabidopsis thaliana GN=STR16 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 3.060e-24
Identity = 53/82 (64.63%), Postives = 65/82 (79.27%), Query Frame = -1
Query:  238 GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDNIIVGCQSGKRSMMAATDLLNAGFAGITDIAGGFAACRQNGLPTE 483
            GHA GAINVPYM R  SGM+KN  F+E+VS+ F + DNIIVGCQSG RS+ A TDLL+AGF G+ DI GG++A  +NGLPT+
Sbjct:   38 GHACGAINVPYMNRGASGMSKNPDFLEQVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK 119          
The following BLAST results are available for this feature:
BLAST of CX305234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DIN1_RAPSA2.504e-2664.63Senescence-associated protein DIN1 OS=Raphanus sat... [more]
STR16_ARATH3.060e-2464.63Thiosulfate sulfurtransferase OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionC18002H02Rv Drought1 Citrus clementina cDNA clone C18002H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305234 ID=CX305234; Name=CX305234; organism=Citrus clementina; type=EST; length=486bp
TTTATTTTTTTTTTTTTTGCAAGTTGACAAGCTGGTTAATTTATTTATTA
TTTTCTGATTTACACAAATTATGTGCAGCCTTTTTATAGATTTCATCCTC
ATTTACACATATCTATATACTTGATATTCCTAGCAGGATTTGTAAGGACC
GCAGTTGGCGAGAAACTTCCCGGCTTTACACAACAGAACATAGATTTTAT
TATGTAGTTTCCCGGCTGCAGAATGAAAGCGTTACAGTTCTGTTGGGAGT
CCATTCTGCCTGCAGGCGGCGAATCCACCAGCAATATCCGTAATGCCGGC
AAAACCTGCATTTAAAAGATCTGTAGCTGCCATCATAGACCTTTTCCCAC
TCTGGCAACCAACAATAATGTTATCATGTTTTCGAAAACGAGTCGATACT
TCCTCCACAAATTTCAGGTTCTTTGTCATCCCTGAACCAACTCTGTACAT
GTAAGGCACATTAATGGCTCCAGTGGCATGTCCAGC
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