CX305235

Overview
NameCX305235
Unique NameCX305235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15052 contig Ccv1_Contig15052:1..542. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305235 vs. ExPASy Swiss-Prot
Match: SPOR1_IPOBA (Sporamin A OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.399e-11
Identity = 49/144 (34.03%), Postives = 77/144 (53.47%), Query Frame = 1
Query:  115 ASESEPILDVYGNQVDSSHRYYLVSALWGVKTGGGISADKGKNGQCPTDVIQLSPKD-KRGKNLGLLPY---DNSTIVRESTNIKLKFSRVSSLQQCNKDSLWKVDNDNASLGKQFITIGE-GKTCQNFFKLEKVSASIFDMKI 531
            AS   P+LD+ G++V +   YY+VSA+WG   GG   A      +C TDVI +SP D   G  + + P      ST+V  ST    +F+ +++ + C  +  W + +D+AS G+ F+  GE      N FK+E V A++   K+
Sbjct:   37 ASSETPVLDINGDEVRAGGNYYMVSAIWGAGGGGLRLAHLDMMSKCATDVI-VSPNDLDNGDPITITPATADPESTVVMASTYQTFRFN-IATNKLCVNNVNWGIQHDSAS-GQYFLKAGEFVSDNSNQFKIELVDANLNSYKL 177          
The following BLAST results are available for this feature:
BLAST of CX305235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SPOR1_IPOBA2.399e-1134.03Sporamin A OS=Ipomoea batatas PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC18002H03Rv Drought1 Citrus clementina cDNA clone C18002H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305235 ID=CX305235; Name=CX305235; organism=Citrus clementina; type=EST; length=557bp
GCGGGGAAAAACAAACAGCAGCTATCCTCAAAAAAAAAAAAACAAATGAA
GACTTCATTAGTAACAACACTCTCCTTCCTTATACTTGCTTTGGCCACAA
AACCTCAGTTGGGCGCCTCAGAATCTGAACCTATCTTAGATGTCTATGGC
AACCAGGTGGACTCCAGCCACAGGTATTATCTTGTCTCAGCACTCTGGGG
AGTTAAAACCGGCGGTGGAATTAGCGCGGACAAAGGCAAAAATGGACAGT
GTCCAACGGATGTTATCCAATTAAGTCCTAAGGACAAAAGGGGAAAGAAT
TTAGGTTTACTTCCGTATGACAATTCCACAATTGTCCGGGAATCCACTAA
TATTAAATTGAAATTCTCAAGAGTTTCTTCTCTTCAGCAGTGTAACAAAG
ATTCGTTGTGGAAAGTTGACAACGATAACGCTTCATTAGGAAAGCAGTTT
ATAACAATCGGTGAAGGTAAAACGTGTCAAAATTTTTTTAAACTTGAGAA
AGTTAGTGCATCAATATTTGATATGAAAATAGCACTAGACATTCCCTGTC
TATACAA
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