CX305238

Overview
NameCX305238
Unique NameCX305238
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14476 contig Ccv1_Contig14476:377..923. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305238 vs. ExPASy Swiss-Prot
Match: ATPD_TOBAC (ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum GN=ATPD PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.485e-15
Identity = 38/125 (30.40%), Postives = 74/125 (59.20%), Query Frame = -2
Query:  172 SLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELSSSWKVNRYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLIQE 546
            +LE    D+ K+ ++  +E +      P VG++ K ++V E+ SS  +  ++A  L +L++  +V ++ ++++EF+++Y+ L  T +  V+S  K+E   L  IAK VQ L G+  V+I+ +I E
Sbjct:   82 TLEQTTADLEKIEKISDDEAVFNFFVSPIVGEEKKRELVDEIVSSSSIQPHVANFLNILVDMKRVELIKEIVKEFEKVYNTLTDTELAVVTSVVKLESQHLAQIAKGVQRLTGSKNVRIKTVIDE 206          
BLAST of CX305238 vs. ExPASy Swiss-Prot
Match: ATPD_SPIOL (ATP synthase delta chain, chloroplastic OS=Spinacia oleracea GN=ATPD PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14
Identity = 39/123 (31.71%), Postives = 71/123 (57.72%), Query Frame = -2
Query:  178 SLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELSSSWKVNRYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLI 546
            +LEA   DV KL R+   E +    A+P +   +K  ++ E+ ++  +  + A  + +LI+  ++ +V ++L EF+ +++ + GT V  V+S  K+E D L  IAK VQ + GA  V+I+ +I
Sbjct:   91 TLEATNSDVEKLIRIFSEEPVYYFFANPVISIDNKRSVLDEIITTSGLQPHTANFINILIDSERINLVKEILNEFEDVFNKITGTEVAVVTSVVKLENDHLAQIAKGVQKITGAKNVRIKTVI 213          
BLAST of CX305238 vs. ExPASy Swiss-Prot
Match: ATPD_PEA (ATP synthase delta chain, chloroplastic OS=Pisum sativum GN=ATPD PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.160e-13
Identity = 37/123 (30.08%), Postives = 71/123 (57.72%), Query Frame = -2
Query:  178 SLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELSSSWKVNRYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLI 546
            +L+A+  D  K+ +L  + ++    + P V D  K Q++ E +++     +    L +LI+  ++ M+ D+++EF+ +Y+ L  T +V V+S  K+E   L  IAK+VQ L GA +V+ + L+
Sbjct:   85 TLDAITADFDKIEQLFSDPKVFDYFSSPIVEDSTKRQLIGEFATTSGFQPHTHNFLNVLIDSKRIDMIIDIIKEFEFVYNTLTDTELVVVTSVVKLESHHLAQIAKQVQKLTGAKKVRTKTLL 207          
BLAST of CX305238 vs. ExPASy Swiss-Prot
Match: ATPD_CHLRE (ATP synthase delta chain, chloroplastic OS=Chlamydomonas reinhardtii GN=ATPD PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.062e-12
Identity = 37/123 (30.08%), Postives = 75/123 (60.98%), Query Frame = -2
Query:  178 LEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELSSSWKVNRYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLI 543
            LEAV  DV  ++ L+K N ++ A+  +P V    K  ++ +++      +Y    L +L+E++++++V ++ E F+ +Y  +  T+V  + SA K+E++Q F IAK++Q L G+  +K++ +I
Sbjct:   56 LEAVHADVDAVAGLMKENAKLSALIMNPVVESDKKRAVLAKIAKEAGFQQYTINWLNLLVEKDRLSLVPEICECFEDLYCQMTDTQVATLRSAVKLEQEQQFLIAKKLQELTGSKNIKLKPVI 178          
The following BLAST results are available for this feature:
BLAST of CX305238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ATPD_TOBAC4.485e-1530.40ATP synthase delta chain, chloroplastic OS=Nicotia... [more]
ATPD_SPIOL2.226e-1431.71ATP synthase delta chain, chloroplastic OS=Spinaci... [more]
ATPD_PEA7.160e-1330.08ATP synthase delta chain, chloroplastic OS=Pisum s... [more]
ATPD_CHLRE6.062e-1230.08ATP synthase delta chain, chloroplastic OS=Chlamyd... [more]
back to top
Properties
Property NameValue
Genbank descriptionC18002H07Rv Drought1 Citrus clementina cDNA clone C18002H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305238 ID=CX305238; Name=CX305238; organism=Citrus clementina; type=EST; length=547bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTT
TTTTTAGGACTGTTAAGGTAACTTTGTTGAGAATACAACAATCTTTAGTT
ATACAGCAACATAACCGTTGCGTCAGCTTTATAAATTGCAATGAACATGA
TTAAGGATAGGATGGCCCTCCCTCCTGAATCAAATTTCTAATCTTGACTT
GTGCAGCCCCACAAAGGTTTTGAACTCTTTTAGCAATATGAAAGAGTTGA
TCTTCCTCCATCTTCTTTGCAGACGAAACAAACACAACTCGAGTCCCAAT
CAAGTCGTCATAGATCCTTTGAAATTCCTCCAAAACATCACTCACCATGG
CCACCTTATTTCTTTCAATCAGCATCCTCAGCAGAGCCGCCAAATACCTA
TTAACTTTCCAACTACTCGACAGTTCCTTCACTATTTGCCCCTTGTCTTT
ATCACCCACGAAAGGGTCAGCACAGACAGCTTGAATTTGCTCATTCTTGA
GCAACCTTGATAACTTTAGGACATCCCTTTGGACAGCTTCAAGTGAA
back to top