CX305241

Overview
NameCX305241
Unique NameCX305241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length564
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX305241 vs. ExPASy Swiss-Prot
Match: U497B_ARATH (UPF0497 membrane protein At2g37200 OS=Arabidopsis thaliana GN=At2g37200 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.578e-34
Identity = 68/88 (77.27%), Postives = 79/88 (89.77%), Query Frame = -1
Query:  250 DIYAILVRRSLRNDKVIRLFTVGDGITSTLTYAAACSSAGITVLISNDLNRCGINHCTRFETATAMAFISWFATSPSFLLNFWSLASH 513
            D YA+LVRRSLRN  V++ FT+GDG+TSTLT+AAA +SAGITVLI NDL +C +NHCTRFETATAMAFISWFA SPSF+LNFWSLA+H
Sbjct:   94 DAYALLVRRSLRNHSVVQCFTIGDGVTSTLTFAAASASAGITVLI-NDLGQCNVNHCTRFETATAMAFISWFAVSPSFILNFWSLATH 180          
BLAST of CX305241 vs. ExPASy Swiss-Prot
Match: U4977_ARATH (UPF0497 membrane protein At2g28370 OS=Arabidopsis thaliana GN=At2g28370 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.963e-32
Identity = 62/87 (71.26%), Postives = 76/87 (87.36%), Query Frame = -1
Query:  253 DIYAILVRRSLRNDKVIRLFTVGDGITSTLTYAAACSSAGITVLISNDLNRCGINHCTRFETATAMAFISWFATSPSFLLNFWSLAS 513
            D+YAI+V+RSL+N +++ LF +GDG+TSTLT+AAAC+SAGITVLI NDLN C  NHC +FET+TA+AFISWFA  PSFL NFWSLAS
Sbjct:   92 DVYAIMVKRSLQNRRLVSLFAIGDGVTSTLTFAAACASAGITVLIDNDLNSCAQNHCVQFETSTALAFISWFAALPSFLFNFWSLAS 178          
BLAST of CX305241 vs. ExPASy Swiss-Prot
Match: U497L_ARATH (UPF0497 membrane protein At3g53850 OS=Arabidopsis thaliana GN=At3g53850 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.411e-14
Identity = 37/90 (41.11%), Postives = 56/90 (62.22%), Query Frame = -1
Query:  253 DIYAILVRRSLRNDKVIRLFTVGDGITSTLTYAAACSSAGITVLISNDLNRCGINH---CTRFETATAMAFISWFATSPSFLLNFWSLAS 513
            D+YA+  ++ L+N  ++ LF VGD +T+ L+ AAACSSAG+ VL   D+  C       C R+E A A++F++W   + S  + FW LAS
Sbjct:   64 DVYALRGKKDLQNPILVSLFVVGDWVTAMLSLAAACSSAGVVVLYEKDIKYCNTQSQYPCLRYEVAVALSFVTWIQIAVSSHVTFWILAS 153          
BLAST of CX305241 vs. ExPASy Swiss-Prot
Match: U497J_ARATH (UPF0497 membrane protein At3g23200 OS=Arabidopsis thaliana GN=At3g23200 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.728e-12
Identity = 36/88 (40.91%), Postives = 54/88 (61.36%), Query Frame = -1
Query:  253 DIYAILVRRSLRNDKVIRLFTVGDGITSTLTYAAACSSAGITVLISNDLNRCGIN-HCTRFETATAMAFISWFATSPSFLLNFWSLAS 513
            D +A++ +++L +  ++ LF VGD +TSTL+ A A SSAGITVL   DL  C     C +++ + A+AF+ W   + S L   W LAS
Sbjct:   64 DTFALVRKKTLLSPVLVSLFVVGDWVTSTLSLAGASSSAGITVLYFGDLGSCSFEAECWKYQLSVALAFLCWITIAVSSLTTLWLLAS 151          
BLAST of CX305241 vs. ExPASy Swiss-Prot
Match: U497X_ARATH (UPF0497 membrane protein At5g02060 OS=Arabidopsis thaliana GN=At5g02060 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.257e-12
Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = -1
Query:  259 DIYAILVRRSLRNDKVIRLFTVGDGITSTLTYAAACSSAGITVLISNDLNRCGIN---HCTRFETATAMAFISWFATSPSFLLNFWSL 513
            D+YAI  +  LR+  ++ LFTVGD +T+ L  AAACSSAG+TVL + D   C       C RF+ +  ++F +WF  + S    FW L
Sbjct:   64 DVYAIRRKSDLRSPILLSLFTVGDWVTALLALAAACSSAGVTVLFTKDTEFCRQQPALSCDRFQISVGLSFFNWFLAAISSHTMFWIL 151          
The following BLAST results are available for this feature:
BLAST of CX305241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
U497B_ARATH3.578e-3477.27UPF0497 membrane protein At2g37200 OS=Arabidopsis ... [more]
U4977_ARATH1.963e-3271.26UPF0497 membrane protein At2g28370 OS=Arabidopsis ... [more]
U497L_ARATH2.411e-1441.11UPF0497 membrane protein At3g53850 OS=Arabidopsis ... [more]
U497J_ARATH1.728e-1240.91UPF0497 membrane protein At3g23200 OS=Arabidopsis ... [more]
U497X_ARATH2.257e-1242.05UPF0497 membrane protein At5g02060 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionC18002H11Rv Drought1 Citrus clementina cDNA clone C18002H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305241 ID=CX305241; Name=CX305241; organism=Citrus clementina; type=EST; length=564bp
TTTGTTTTTTTTTTTTTTTTTTTTTTTTTTATGGAAAGGCGTTCCACGTT
TCATATGTTCGTTCATTGAAAAATATCCAGCACACTTTATATATGTACAC
AGTAGGTACAACTTAATCAATTCCATAGCTGGAGTTACATAGGAAAATCT
GTGCATCGAAAGTATGGTTCTTTGCTGATTATGAACTCTTGTCTACCCAA
TTCTTAGTGGTTCTTTGCTGATTATGGACTCTTGTCTACCCAATTCTTAG
TGGGAAGCCAATGACCAGAAATTCAGGAGAAAGGATGGTGAAGTAGCAAA
CCAACTGATAAAAGCCATTGCCGTAGCAGTCTCAAACCTTGTACAGTGGT
TAATTCCACATCGGTTAAGATCATTGCTGATAAGAACTGTGATTCCTGCA
GATGAGCAGGCGGCTGCATATGTAAGGGTGGATGTGATCCCATCACCAAC
GGTAAATAAACGGATAACCTTATCATTCCGCAGACTTCTTCTCACCAGGA
TAGCATATATATCAAGCACTAACAGGGATAGACTCCACAAACTTTGCAAG
CCTAGAGCAAGAAC
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