CX305247

Overview
NameCX305247
Unique NameCX305247
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length341
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX305247 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.146e-11
Identity = 32/85 (37.65%), Postives = 49/85 (57.65%), Query Frame = 1 
Query:    7 DSLQAVLSGVARGGGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFTDWGKQASKARERI 261
            + +Q +LSGVA G GWQ + A+VNL  YY++G+PI  VL F   L   G+  G+  G  +Q   L +  + T+W  +   A +R+
Sbjct:  408 NGIQPILSGVAIGSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMIAGVILQTLTLIVLTLKTNWTSEVENAAQRV 492
[Close]
BLAST of CX305247 vs. ExPASy Swiss-Prot
Match: YD338_YEAST (Uncharacterized transporter YDR338C OS=Saccharomyces cerevisiae GN=YDR338C PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.554e-11
Identity = 38/97 (39.18%), Postives = 55/97 (56.70%), Query Frame = 1 
Query:    7 DSLQAVLSGVARGGGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFTDWGKQASKARERIFEGDSQQRQSQE 297
            DSL AV     RG G Q +G+ VNL AYYL GIP+A +L++ F +K  GL IG+ +   +   + A  ++F DW K  + A E + E +  +  S E
Sbjct:  583 DSLNAVAGSCLRGQGMQSLGSIVNLMAYYLFGIPLALILSWFFDMKLYGLWIGIGSAMLLIGLVEAYYVLFPDWDKIMTYA-EILKETEDDEVDSDE 678
The following BLAST results are available for this feature:
BLAST of CX305247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TT12_ARATH1.146e-1137.65Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
YD338_YEAST2.554e-1139.18Uncharacterized transporter YDR338C OS=Saccharomyc... [more]
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Properties
Property NameValue
Genbank descriptionC18003A11Rv Drought1 Citrus clementina cDNA clone C18003A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305247 ID=CX305247; Name=CX305247; organism=Citrus clementina; type=EST; length=341bp
GCGGGGGACAGTTTACAAGCAGTACTCTCAGGTGTTGCAAGAGGAGGTGG
GTGGCAAAAGATAGGAGCCTTTGTAAATCTTGGAGCATATTATCTTGTTG
GAATTCCAATAGCAGCAGTTTTGGCTTTCGTTTTTCAGTTAAAAGGGAAA
GGTCTTTTGATTGGACTAGCAACAGGATCTTTTGTGCAAGCAGCTTTGCT
TGCTCTCAAAATAGTCTTCACAGATTGGGGAAAACAGGCATCAAAAGCAA
GAGAGAGAATCTTTGAAGGAGATTCCCAGCAGAGGCAGAGCCAGGAAATT
GACTCATAAAGGGCAACATGGGAACCCACTTTTCATAAGAT
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