CX305249

Overview
NameCX305249
Unique NameCX305249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10111 contig Ccv1_Contig10111:756..1244. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305249 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.232e-16
Identity = 48/150 (32.00%), Postives = 82/150 (54.67%), Query Frame = 3
Query:   42 MKTLLATILSFLILALASCPLLVLGTSSVPEPLLDVNGNKVESTLQYHIVSAIWXXXXXXXXXXXXXXXYCPLDVIQLPSAIQWGKKLILSPYDNST-IVRESTDLNLRFVGLLSGSKQCNELPLWKVDNYDASSGRWFITTGGLDGHPG 488
            MKT  A +L  L+ A  S        ++   P+LD +G+++++ +QY+++S+I                 CP  V+Q  S +  G  +I S  D+   +VR STD+N+ FV +    + C+   +W++DNYD S+G+W++TT G+ G PG
Sbjct:    1 MKTATAVVL--LLFAFTSKSYFFGVANAANSPVLDTDGDELQTGVQYYVLSSISGAGGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPIRD--RLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPG 146          
BLAST of CX305249 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 9.236e-13
Identity = 49/156 (31.41%), Postives = 75/156 (48.08%), Query Frame = 3
Query:   42 MKTLLATILSFL----ILALASCPLLVLGTSSVPEPLLDVNGNKVESTLQYHIVSAI--WXXXXXXXXXXXXXXXYCPLDVIQLPSAIQWGKKLILSPYD-NSTIVRESTDLNLRFVGLLSGSKQCNELPLWKVDNYDASSGRWFITTGGLDGHPG 488
            MK L    LSF     +LA A+ PLL     S P P+LD++G K+ +   Y+IV  +                   CP  V+Q    +   + L   P +    +VR STDLN+ F   +    +     +W++D YD S+G++F+T GG+ G+PG
Sbjct:    1 MKELTMLSLSFFFVSALLAAAANPLLS-AADSAPNPVLDIDGEKLRTGTNYYIVPVLRDHGGGLTVSATTPNGTFVCPPRVVQTRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFSAFMPC--RWTSSTVWRLDKYDESTGQYFVTIGGVKGNPG 153          
The following BLAST results are available for this feature:
BLAST of CX305249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ASP_THECC5.232e-1632.0021 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU9.236e-1331.41Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
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Properties
Property NameValue
Genbank descriptionC18003B04Rv Drought1 Citrus clementina cDNA clone C18003B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305249 ID=CX305249; Name=CX305249; organism=Citrus clementina; type=EST; length=489bp
GCGGGGGCATCAAACAGATATCATAGCTTTGAAATAACAAAATGAAGACT
TTATTAGCAACAATACTCTCCTTCCTCATCCTTGCCTTGGCCTCATGCCC
TCTATTGGTCTTGGGCACCTCATCAGTTCCTGAACCTCTCCTTGATGTCA
ATGGCAACAAGGTTGAATCCACTCTTCAGTACCATATAGTCTCAGCCATC
TGGGGAGCTGGCGGCGGTGGAGTTAGCCTACACGGAGGCAGAAACGGATA
CTGTCCGTTGGATGTTATCCAATTACCTTCTGCTATCCAATGGGGAAAGA
AATTAATACTGTCACCATATGACAATTCTACAATTGTCAGAGAATCCACT
GATCTCAACTTGAGATTCGTAGGGTTACTATCTGGAAGTAAGCAATGTAA
CGAGCTACCGTTGTGGAAAGTTGATAACTATGACGCTTCATCAGGCAGAT
GGTTTATAACAACCGGGGGACTTGATGGTCACCCTGGGG
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