CX305568

Overview
NameCX305568
Unique NameCX305568
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length324
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig860 contig Ccv1_Contig860:400..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX305568 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.688e-18
Identity = 39/91 (42.86%), Postives = 60/91 (65.93%), Query Frame = -2 
Query:   51 CNEQPLWKVDNYDATSGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGTYKIVHCPSVCESCVKHCNNVGRSFEDGVRRLILVRDDEPAF 323
            C+   +W++DNYD ++GKW++TT G+ G PG  TL +WFK+EK G     YK   CPSVC+SC   C+++GR  +D  +  + + D+E A+
Sbjct:  116 CSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVL--GYKFRFCPSVCDSCTTLCSDIGRHSDDDGQIRLALSDNEWAW 204
[Close]
BLAST of CX305568 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.024e-15
Identity = 36/86 (41.86%), Postives = 56/86 (65.12%), Query Frame = -2 
Query:   51 LWKVDNYDATSGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGTYKIVHCPSVCESCVKHCNNVGRSFEDGVRRLILVRDDEPAF 308
            +W++D YD ++G++F+T GG+ G+PG ET+ +WFK+E+     G YK+V CP+VC SC   C +VG   +   RR + + D   AF
Sbjct:  128 VWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCG-SGFYKLVFCPTVCGSCKVKCGDVGIYIDQKGRRRLALSDKPFAF 212
The following BLAST results are available for this feature:
BLAST of CX305568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ASP_THECC1.688e-1842.8621 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU1.024e-1541.86Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
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Properties
Property NameValue
Genbank descriptionC18007D02Rv Drought1 Citrus clementina cDNA clone C18007D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305568 ID=CX305568; Name=CX305568; organism=Citrus clementina; type=EST; length=324bp
ATTGATTACACAGACGTCGATCTTTCTCTAGCTGGAATTAACACAACAGG
AAATGCCGGCTCATCATCACGAACCAGAATCAGACGTCGAACGCCATCCT
CAAACGAACGGCCAACGTTGTTGCAGTGTTTGACACAAGACTCGCAAACG
GATGGACAATGAACGATTTTGTATGTACCTGGAAAATTTCCAATTTTCTC
AAGCTTAAACCAATTTAGCAAAGTTTCAGCTCCAGGATGACCATCAAGTC
CCCCGGTTGTTATAAACCATTTGCCTGATGTAGCGTCATAATTATCAACT
TTCCACAACGGTTGTTCGTTACAA
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