CX305584

Overview
NameCX305584
Unique NameCX305584
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length498
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX305584 vs. ExPASy Swiss-Prot
Match: UCRI_MAIZE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Zea mays PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.481e-33
Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = -3 
Query:  305 LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLLIG 496
            LVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVP Y+FL+ENKLL+G
Sbjct:  210 LVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPTYSFLEENKLLVG 273
[Close]
BLAST of CX305584 vs. ExPASy Swiss-Prot
Match: UCRI_SOLTU (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Solanum tuberosum GN=FES1 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.108e-32
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = -3 
Query:  305 LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLLIG 496
            LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAP+NLEVP Y+FL+ENKLLIG
Sbjct:  202 LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 265
[Close]
BLAST of CX305584 vs. ExPASy Swiss-Prot
Match: UCRI4_TOBAC (Cytochrome b-c1 complex subunit Rieske-4, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.447e-32
Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = -3 
Query:  305 LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLLIG 496
            LVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAP+NLEVP Y+FL+ENKLLIG
Sbjct:  173 LVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 236
[Close]
BLAST of CX305584 vs. ExPASy Swiss-Prot
Match: UCRI2_TOBAC (Cytochrome b-c1 complex subunit Rieske-2, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.447e-32
Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = -3 
Query:  305 LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLLIG 496
            LVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAP+NLEVP Y+FL+ENKLLIG
Sbjct:  209 LVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 272
[Close]
BLAST of CX305584 vs. ExPASy Swiss-Prot
Match: UCRI1_TOBAC (Cytochrome b-c1 complex subunit Rieske-1, mitochondrial (Fragment) OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.447e-32
Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = -3 
Query:  305 LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLLIG 496
            LVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAP+NLEVP Y+FL+ENKLLIG
Sbjct:  195 LVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 258
[Close]
BLAST of CX305584 vs. ExPASy Swiss-Prot
Match: UCRI5_TOBAC (Cytochrome b-c1 complex subunit Rieske-5, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.468e-32
Identity = 58/64 (90.62%), Postives = 63/64 (98.44%), Query Frame = -3 
Query:  305 LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLLIG 496
            LVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAP+NLEVP Y+F++ENKLLIG
Sbjct:  205 LVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFMEENKLLIG 268
[Close]
BLAST of CX305584 vs. ExPASy Swiss-Prot
Match: UCRI3_TOBAC (Cytochrome b-c1 complex subunit Rieske-3, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.468e-32
Identity = 58/64 (90.62%), Postives = 63/64 (98.44%), Query Frame = -3 
Query:  305 LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLLIG 496
            LVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAP+NLEVP Y+F++ENKLLIG
Sbjct:  205 LVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFMEENKLLIG 268
[Close]
BLAST of CX305584 vs. ExPASy Swiss-Prot
Match: UCRI_NEUCR (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Neurospora crassa GN=NCU06606 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.830e-27
Identity = 49/64 (76.56%), Postives = 58/64 (90.62%), Query Frame = -3 
Query:  305 LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLLIG 496
            LV++GVCTHLGC+P+  AGD+GGWFCPCHGSHYDISGRIRKGPAP NLE+P+Y F +E KL+IG
Sbjct:  168 LVMLGVCTHLGCVPIGEAGDYGGWFCPCHGSHYDISGRIRKGPAPLNLEIPLYEFPEEGKLVIG 231
[Close]
BLAST of CX305584 vs. ExPASy Swiss-Prot
Match: UCRI_YEAST (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Saccharomyces cerevisiae GN=RIP1 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.312e-25
Identity = 46/64 (71.88%), Postives = 57/64 (89.06%), Query Frame = -3 
Query:  305 LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLLIG 496
            L+++G+CTHLGC+P+  AGDFGGWFCPCHGSHYDISGRIRKGPAP NLE+P Y F D +K+++G
Sbjct:  153 LIMLGICTHLGCVPIGEAGDFGGWFCPCHGSHYDISGRIRKGPAPLNLEIPAYEF-DGDKVIVG 215
[Close]
BLAST of CX305584 vs. ExPASy Swiss-Prot
Match: UCRI_SAISC (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Saimiri sciureus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.713e-25
Identity = 44/64 (68.75%), Postives = 57/64 (89.06%), Query Frame = -3 
Query:  305 LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLLIG 496
            ++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIRKGPAP NLEVP Y FL ++ +++G
Sbjct:  211 MILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPTYEFLSDDMVVVG 274
The following BLAST results are available for this feature:
BLAST of CX305584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
UCRI_MAIZE8.481e-3392.19Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_SOLTU1.108e-3293.75Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI4_TOBAC1.447e-3292.19Cytochrome b-c1 complex subunit Rieske-4, mitochon... [more]
UCRI2_TOBAC1.447e-3292.19Cytochrome b-c1 complex subunit Rieske-2, mitochon... [more]
UCRI1_TOBAC1.447e-3292.19Cytochrome b-c1 complex subunit Rieske-1, mitochon... [more]
UCRI5_TOBAC2.468e-3290.63Cytochrome b-c1 complex subunit Rieske-5, mitochon... [more]
UCRI3_TOBAC2.468e-3290.63Cytochrome b-c1 complex subunit Rieske-3, mitochon... [more]
UCRI_NEUCR1.830e-2776.56Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_YEAST1.312e-2571.88Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_SAISC1.713e-2568.75Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]

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Properties
Property NameValue
Genbank descriptionC18007E08Rv Drought1 Citrus clementina cDNA clone C18007E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305584 ID=CX305584; Name=CX305584; organism=Citrus clementina; type=EST; length=498bp
TTTTTTTTTTTTTTTTTTTTTTTGCGGCTGAAACATCATCTTTCATGAAC
TTAGATTATTTAACAAAATTTAAGAACCATTCAAGGTGAAAGTGCTCAAC
AAATTTCCAGTTGCACTATTCTCAACTTCAGAATTGCTTTATATGTAAAG
CATAGCTGAATAGCTTAAAGCAAAACAAAATCAATTTGTGGAATCAAATT
TTCCTTTGGTGGAAGAGAGGGGGAAAATAAAAAAAAAAAAGGAAACTATT
ACAACACTCATTCAAAGGGAACTGCTCCAAAAAGATATCCACTATCAATG
ATCACCCAATCAGTAACTTGTTCTCGTCCAAGAAATTGTACATGGGTACC
TCTAGATTGAATGGTGCTGGCCCCTTGCGGATCCTGCCAGATATGTCATA
GTGCGAACCATGGCAGGGGCAGAACCAACCTCCAAAGTCACCAGCATTTG
GTAAAGGAATGCACCCCAAATGTGTGCACACACCAACAACGACCAGCC
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