CX305588

Overview
NameCX305588
Unique NameCX305588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length337
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig864 contig Ccv1_Contig864:1..337. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305588 vs. ExPASy Swiss-Prot
Match: NFS1_ARATH (Cysteine desulfurase 1, mitochondrial OS=Arabidopsis thaliana GN=NIFS PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.112e-33
Identity = 68/75 (90.67%), Postives = 73/75 (97.33%), Query Frame = -1
Query:  113 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAMELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 337
            SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTT+ E+D+A+ELTVKQVEKLREMSPLYEMVKEGIDIK IQW+QH
Sbjct:  379 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTKEEIDKAVELTVKQVEKLREMSPLYEMVKEGIDIKNIQWSQH 453          
BLAST of CX305588 vs. ExPASy Swiss-Prot
Match: ISCS_ANADF (Cysteine desulfurase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=iscS PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.654e-26
Identity = 54/73 (73.97%), Postives = 65/73 (89.04%), Query Frame = -1
Query:  119 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAMELTVKQVEKLREMSPLYEMVKEGIDIKQIQWA 337
            SASLEPSYVLRA+G+ ED+AH+SIRFG+GRFTTE EVD  + L V++V KLREMSPLYEMVKEG+D+ QI+WA
Sbjct:  329 SASLEPSYVLRAMGISEDLAHSSIRFGLGRFTTEEEVDHVVRLVVEKVRKLREMSPLYEMVKEGVDLSQIEWA 401          
BLAST of CX305588 vs. ExPASy Swiss-Prot
Match: NFS1_DROME (Probable cysteine desulfurase, mitochondrial OS=Drosophila melanogaster GN=CG12264 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.685e-26
Identity = 55/75 (73.33%), Postives = 65/75 (86.67%), Query Frame = -1
Query:  113 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAMELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 337
            SASLEPSYVLRA+G DED+AH+SIRFGIGRFTT  EVD   +  +K VE+LREMSPL+EMV+EGID+K IQW+QH
Sbjct:  388 SASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTVEEVDYTADKCIKHVERLREMSPLWEMVQEGIDLKTIQWSQH 462          
BLAST of CX305588 vs. ExPASy Swiss-Prot
Match: NFS1_HUMAN (Cysteine desulfurase, mitochondrial OS=Homo sapiens GN=NFS1 PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 8.208e-26
Identity = 53/75 (70.67%), Postives = 66/75 (88.00%), Query Frame = -1
Query:  113 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAMELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 337
            SASLEPSYVLRA+G DED+AH+SIRFGIGRFTTE EVD  +E  ++ V++LREMSPL+EMV++GID+K I+W QH
Sbjct:  383 SASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTVEKCIQHVKRLREMSPLWEMVQDGIDLKSIKWTQH 457          
BLAST of CX305588 vs. ExPASy Swiss-Prot
Match: NFS1_PONAB (Cysteine desulfurase, mitochondrial OS=Pongo abelii GN=NFS1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.072e-25
Identity = 52/75 (69.33%), Postives = 66/75 (88.00%), Query Frame = -1
Query:  113 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAMELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 337
            SASLEPSYVLRA+G DED+AH+SIRFG+GRFTTE EVD  +E  ++ V++LREMSPL+EMV++GID+K I+W QH
Sbjct:  383 SASLEPSYVLRAIGTDEDLAHSSIRFGVGRFTTEEEVDYTVEKCIQHVKRLREMSPLWEMVQDGIDLKSIKWTQH 457          
BLAST of CX305588 vs. ExPASy Swiss-Prot
Match: ISCS_RICFE (Cysteine desulfurase OS=Rickettsia felis GN=iscS PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 1.400e-25
Identity = 52/75 (69.33%), Postives = 68/75 (90.67%), Query Frame = -1
Query:  113 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAMELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 337
            SASLEPSYVLR++G+ E++AHTSIRFGIGRFTTE EVD A++L   +++KLRE+SPL+EMV+EGID+K+I+WA H
Sbjct:  336 SASLEPSYVLRSMGIGEELAHTSIRFGIGRFTTEQEVDYAVDLICSKIDKLRELSPLWEMVQEGIDLKKIKWATH 410          
BLAST of CX305588 vs. ExPASy Swiss-Prot
Match: NFS1_DICDI (Probable cysteine desulfurase, mitochondrial OS=Dictyostelium discoideum GN=nfs1 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.829e-25
Identity = 53/74 (71.62%), Postives = 67/74 (90.54%), Query Frame = -1
Query:  116 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAMELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQ 337
            S+SLEPSYVLR+LGV+EDMAH+SIRFGIGRFTTE E+D  +E+  K V++LR+MSPL+EMV+EGIDIK I+W+Q
Sbjct:  376 SSSLEPSYVLRSLGVEEDMAHSSIRFGIGRFTTEQEIDYTIEILKKNVQRLRDMSPLWEMVQEGIDIKTIEWSQ 449          
BLAST of CX305588 vs. ExPASy Swiss-Prot
Match: ISCS_SHEON (Cysteine desulfurase OS=Shewanella oneidensis GN=iscS PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.829e-25
Identity = 51/75 (68.00%), Postives = 66/75 (88.00%), Query Frame = -1
Query:  113 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAMELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 337
            SASLEPSYVLRALG++++MAH+SIRF IGRFTTE E+D A+E+  + ++KLREMSPL+EM K+GID+ Q+QWA H
Sbjct:  330 SASLEPSYVLRALGLNDEMAHSSIRFSIGRFTTEEEIDHAIEVITQSIDKLREMSPLWEMFKDGIDLNQVQWAHH 404          
BLAST of CX305588 vs. ExPASy Swiss-Prot
Match: ISCS_SHEB9 (Cysteine desulfurase OS=Shewanella baltica (strain OS195) GN=iscS PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.829e-25
Identity = 51/75 (68.00%), Postives = 66/75 (88.00%), Query Frame = -1
Query:  113 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAMELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 337
            SASLEPSYVLRALG++++MAH+SIRF IGRFTTE E+D A+E+  + ++KLREMSPL+EM K+GID+ Q+QWA H
Sbjct:  330 SASLEPSYVLRALGLNDEMAHSSIRFSIGRFTTEEEIDHAIEVITQSIDKLREMSPLWEMFKDGIDLNQVQWAHH 404          
BLAST of CX305588 vs. ExPASy Swiss-Prot
Match: ISCS_SHEB8 (Cysteine desulfurase OS=Shewanella baltica (strain OS185) GN=iscS PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.829e-25
Identity = 51/75 (68.00%), Postives = 66/75 (88.00%), Query Frame = -1
Query:  113 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAMELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 337
            SASLEPSYVLRALG++++MAH+SIRF IGRFTTE E+D A+E+  + ++KLREMSPL+EM K+GID+ Q+QWA H
Sbjct:  330 SASLEPSYVLRALGLNDEMAHSSIRFSIGRFTTEEEIDHAIEVITQSIDKLREMSPLWEMFKDGIDLNQVQWAHH 404          
The following BLAST results are available for this feature:
BLAST of CX305588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 165
Match NameE-valueIdentityDescription
NFS1_ARATH3.112e-3390.67Cysteine desulfurase 1, mitochondrial OS=Arabidops... [more]
ISCS_ANADF1.654e-2673.97Cysteine desulfurase OS=Anaeromyxobacter sp. (stra... [more]
NFS1_DROME3.685e-2673.33Probable cysteine desulfurase, mitochondrial OS=Dr... [more]
NFS1_HUMAN8.208e-2670.67Cysteine desulfurase, mitochondrial OS=Homo sapien... [more]
NFS1_PONAB1.072e-2569.33Cysteine desulfurase, mitochondrial OS=Pongo abeli... [more]
ISCS_RICFE1.400e-2569.33Cysteine desulfurase OS=Rickettsia felis GN=iscS P... [more]
NFS1_DICDI1.829e-2571.62Probable cysteine desulfurase, mitochondrial OS=Di... [more]
ISCS_SHEON1.829e-2568.00Cysteine desulfurase OS=Shewanella oneidensis GN=i... [more]
ISCS_SHEB91.829e-2568.00Cysteine desulfurase OS=Shewanella baltica (strain... [more]
ISCS_SHEB81.829e-2568.00Cysteine desulfurase OS=Shewanella baltica (strain... [more]

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Properties
Property NameValue
Genbank descriptionC18007E12Rv Drought1 Citrus clementina cDNA clone C18007E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305588 ID=CX305588; Name=CX305588; organism=Citrus clementina; type=EST; length=337bp
AAGCGCGACGGGAAGAAACCTGGATTAAAACTCAAAGGTGGTTCTCTGCT
CTAACTCACAGGTCTGCCTTTTCACTTGACGCACATACAATTTCACATCA
ACAACCGCCTCAGTGTTGAGCCCATTGTATCTGCTTTATATCAATTCCTT
CTTTCACCATCTCATATAGCGGGCTCATTTCCCTCAACTTCTCAACCTGC
TTCACTGTAAGCTCCATAGCCCTATCAACCTCCGCCTCCGTAGTAAACCT
CCCAATCCCAAACCTAATCGAAGTATGTGCCATATCCTCGTCCACACCTA
ATGCCCTCAGAACATATGATGGCTCCAAACTTGCACT
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