CX305589

Overview
NameCX305589
Unique NameCX305589
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length357
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1030 contig Ccv1_Contig1030:186..542. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305589 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.962e-15
Identity = 40/95 (42.11%), Postives = 59/95 (62.11%), Query Frame = -3
Query:   11 CPLDVIQLPFDTQNGIKLTLSPYNNST-IVRESTDLNLRFSVLLSGRD-YCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIG 289
            CP  V+Q   D  NG  +  S  ++   +VR STD+N+ F  +   RD  C+   +W++DNYD ++GKW++TT G+ G PG  TL +WFK+EK G
Sbjct:   69 CPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPI---RDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAG 160          
BLAST of CX305589 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 4.729e-13
Identity = 35/92 (38.04%), Postives = 55/92 (59.78%), Query Frame = -3
Query:   17 CPLDVIQLPFDTQNGIKLTLSPYN-NSTIVRESTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEK 289
            CP  V+Q   +  +   L   P N    +VR STDLN+ FS  +  R       +W++D YD ++G++F+T GG+ G+PG ET+ +WFK+E+
Sbjct:   76 CPPRVVQTRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFSAFMPCR--WTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEE 165          
BLAST of CX305589 vs. ExPASy Swiss-Prot
Match: LSPI_CARPA (Latex serine proteinase inhibitor OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.165e-11
Identity = 44/118 (37.29%), Postives = 60/118 (50.85%), Query Frame = -3
Query:   11 IVSAIWXXXXXXXXXXXXXXGY-CPLDVIQLPFDTQNGIKLTLSPYNN--STIVRESTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIG 355
            +VSAIW                 CPL V+Q PFD  NG  +  S   N    IV ES DLN++F++ ++    CNE   WKVD +    G W +T GG  G+ G E+  + FK++K G
Sbjct:   22 VVSAIWGAGGGGLTVYGPGNKKKCPLSVVQDPFD--NGEPIIFSAIKNVKDNIVFESVDLNVKFNITIN----CNETTAWKVDRFPGVIG-WTVTLGGEKGYHGFESTHSMFKIKKAG 132          
The following BLAST results are available for this feature:
BLAST of CX305589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ASP_THECC2.962e-1542.1121 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU4.729e-1338.04Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
LSPI_CARPA1.165e-1137.29Latex serine proteinase inhibitor OS=Carica papaya... [more]
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Properties
Property NameValue
Genbank descriptionC18007F01Rv Drought1 Citrus clementina cDNA clone C18007F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305589 ID=CX305589; Name=CX305589; organism=Citrus clementina; type=EST; length=357bp
TTGGAAAATTTCCAATTTTCTCAAGCTTAAACCAATTTAGCAAAGTTTCA
GCTCCAGGGTGACCATCAAGTCCCCCGGTTGTTATAAACCATTTGCCTGA
TGCCGCGTCATAATTATCAACTTTCCACAACGGTTGTTCGTTACAATAGT
CACGTCCAGATAGCAACACTGAGAATCTCAAGTTGAGATCAGTGGATTCT
CGGACAATTGTAGAATTGTTATACGGTGACAGTGTTAATTTGATTCCATT
TTGCGTATCAAAAGGTAATTGGATAACGTCCAGCGGACAATATCCGTTTC
TGCCACCGTGTAGGCTAACTCCACCACCGCCAGCTCCCCAGATGGCTGAG
ACTATGT
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