CX305594

Overview
NameCX305594
Unique NameCX305594
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length490
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:2406..2895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305594 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 4.480e-39
Identity = 74/119 (62.18%), Postives = 95/119 (79.83%), Query Frame = -2
Query:  124 DEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKKIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNKNGAGMVPYELLKPFSEPGVTGKGVPYSIFI 480
            D++ K F+ +PE  LL + PSQ+QA KVMA LD+LS+HSPDEEY+G+  EPAW  +P++ AAFEKF G+L E EG ID RN +P+ +N+ GAG+VPYELLKPFSEPGVTG+G+P SI I
Sbjct:  778 DDEMKKFMARPEEVLLQSLPSQMQAIKVMATLDILSSHSPDEEYMGEYAEPAWLAEPMVKAAFEKFSGRLKEAEGTIDMRNNNPENKNRCGAGIVPYELLKPFSEPGVTGRGIPNSISI 896          
BLAST of CX305594 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 5.851e-39
Identity = 79/122 (64.75%), Postives = 93/122 (76.23%), Query Frame = -2
Query:  124 DPFDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKKIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNKNGAGMVPYELLKPFSEPGVTGKGVPYSIFI 489
            DP DE  K F E PE  LL T+PSQ QAT VM  LD+LSTHSPDEEY+G++ E +W  +PVINAAFE+F+GKL  LEG+ID RN +  L+N+ GAG+V YELLKP SE GVTG GVPYSI I
Sbjct:  775 DPTDEALKEFYESPEKVLLKTYPSQKQATLVMVTLDLLSTHSPDEEYIGEQQEASWANEPVINAAFERFKGKLQYLEGVIDERNVNITLKNRAGAGVVKYELLKPTSEHGVTGMGVPYSISI 896          
BLAST of CX305594 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 6.928e-32
Identity = 64/113 (56.64%), Postives = 82/113 (72.57%), Query Frame = -2
Query:  124 FLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKKIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNKNGAGMVPYELLKPFSEPGVTGKGVPYSIFI 462
            FL+ P+ AL   FPSQ+QAT VMA+LDVLSTHS DEEYLG +    W  D  + AA+  F  +L E+EG+ID RN D KL+N+ GAG++PY+L+KPFS+ GVTG G+P S  I
Sbjct:  829 FLDNPDQALRECFPSQVQATVVMAVLDVLSTHSTDEEYLGGEQTRPWNSDAAVQAAYAGFTARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSDAGVTGMGIPNSTSI 941          
BLAST of CX305594 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 9.048e-32
Identity = 63/113 (55.75%), Postives = 83/113 (73.45%), Query Frame = -2
Query:  124 FLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKKIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNKNGAGMVPYELLKPFSEPGVTGKGVPYSIFI 462
            FL+ P+ AL   FPSQ+QAT VMA+LDVLS+HS DEEYLG +    W  D  + AA++ F  +L E+EG+ID RN D KL+N+ GAG++PY+L+KPFS+ GVTG G+P S  I
Sbjct:  812 FLDNPDQALRECFPSQVQATVVMAVLDVLSSHSTDEEYLGGEQTRPWNSDAAVQAAYDGFAARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSDSGVTGMGIPNSTSI 924          
BLAST of CX305594 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 8.764e-27
Identity = 59/123 (47.97%), Postives = 82/123 (66.67%), Query Frame = -2
Query:  124 DPFDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKKIEPA-WREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNKNGAGMVPYELLKPFSEPGVTGKGVPYSIFI 489
            D  D ++  F+E P+    ++ PS +Q TK MA++D LSTHSPDEEY+G++ +P+ W  D  I  AF  F  ++  +E  ID RN DP  RN+ GAG++PYEL+ P SEPGVT +GVP S+ I
Sbjct:  804 DESDPEFTSFIEDPQKYFFSSMPSLLQTTKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVDAFYGFSAEIGRIEKEIDKRNRDPSRRNRCGAGVLPYELMAPSSEPGVTCRGVPNSVSI 926          
BLAST of CX305594 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.952e-26
Identity = 58/121 (47.93%), Postives = 83/121 (68.60%), Query Frame = -2
Query:  124 DEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLG--KKIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNKNGAGMVPYELLKPFSEPGVTGKGVPYSIFI 480
            D  ++ F+  P+ + L + P+Q+QATKVMA+ + LSTHSPDEEYL   ++++  W +D  +   F KF  +L+++E  I+ RN D KL+N+ GAGM PYELL P S  GVTG+G+P SI I
Sbjct:  797 DPDYEMFMRNPQYSFLGSLPTQLQATKVMAVQETLSTHSPDEEYLIELREVQRHWFQDEQVVKYFNKFSEELVKIEKTINERNKDKKLKNRTGAGMPPYELLLPTSPHGVTGRGIPNSISI 917          
BLAST of CX305594 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.681e-26
Identity = 59/123 (47.97%), Postives = 81/123 (65.85%), Query Frame = -2
Query:  124 DPFDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKKIEPA-WREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNKNGAGMVPYELLKPFSEPGVTGKGVPYSIFI 489
            D  D ++  F+  PE    ++ PS  Q +K MA++D LSTHSPDEEY+G++ +P+ W  D  I  AF  F  ++  +E  I+ RNADP  RN+ GAG++PYELL P SEPGVT +GVP S+ I
Sbjct:  797 DESDPEYASFISHPEKYYFSSMPSLAQTSKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVEAFYGFAAEIGRIEKEIEKRNADPDRRNRCGAGVLPYELLVPSSEPGVTCRGVPNSVSI 919          
BLAST of CX305594 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.281e-25
Identity = 61/123 (49.59%), Postives = 78/123 (63.41%), Query Frame = -2
Query:  124 FLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKKIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNKNGAGMVPYELLK----------PFSEPGVTGKGVPYSIFI 462
            F+E PE  LL+TFPSQ Q+  V+AILD+LSTHS DEEY+G   EPAW +D VIN AFE+F+    ++   +D  N DP  +N++GAGMVPY LL+          P  E  V   G+P SI I
Sbjct:  814 FVEAPEKVLLDTFPSQYQSAIVLAILDLLSTHSSDEEYMGTHEEPAWTKDGVINQAFEEFKESTRKIVEQVDEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936          
BLAST of CX305594 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 9.069e-24
Identity = 53/119 (44.54%), Postives = 72/119 (60.50%), Query Frame = -2
Query:  124 DEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKKIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNKNGAGMVPYELLKPFSEPGVTGKGVPYSIFI 480
            D ++   +  P    L+  PS  Q T  M ++D LSTHS DEEYLG++ + AW  DP   AA  +F   +   E  I+ RNADP  RN+ GAG++PYEL+ P S PG+T +GVP S+ I
Sbjct:  781 DPEYAHLVADPHRFFLSALPSLTQTTTFMTVIDTLSTHSADEEYLGERPDEAWTADPAALAAAREFAADVRRAEEEIERRNADPSRRNRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 899          
BLAST of CX305594 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 4.977e-22
Identity = 56/120 (46.67%), Postives = 71/120 (59.17%), Query Frame = -2
Query:  124 QWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKKIEPA---WREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNKNGAGMVPYELLKPFSEPGVTGKGVPYSIFI 474
            ++  FL  P    LN  P  ++ATK MA++D LSTHSPDEEYLG+  +     W  D    AA   F   +   E  I+ RNAD   +N+ GAG++PYELL P S PGVT +GVP SI I
Sbjct:  799 EYAAFLADPHRFFLNAMPGVLEATKFMAVVDTLSTHSPDEEYLGEGRDEGGVPWTADEAAVAAHGMFAADVRRAEETIERRNADHGRKNRCGAGVLPYELLAPSSPPGVTCRGVPNSISI 918          
The following BLAST results are available for this feature:
BLAST of CX305594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX23_HORVU4.480e-3962.18Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOX2_ARATH5.851e-3964.75Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOXC2_ORYSJ6.928e-3256.64Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOXC1_ORYSJ9.048e-3255.75Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX4_ARATH8.764e-2747.97Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX6_ARATH1.952e-2647.93Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX3_ARATH5.681e-2647.97Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX21_HORVU6.281e-2549.59Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX5_ORYSJ9.069e-2444.54Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX6_ORYSJ4.977e-2246.67Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionC18007F06Rv Drought1 Citrus clementina cDNA clone C18007F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305594 ID=CX305594; Name=CX305594; organism=Citrus clementina; type=EST; length=490bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCACGGCAATTTATTTGATT
CATTCTTGAACTCATTCTCAAAAGTTTTTATTGACACAACATTCGAGCGA
TTGCAACAACATTTTCAACTCTAAATAAAAATGCTGTACGGAACTCCTTT
TCCTGTAACACCAGGTTCCGAAAATGGCTTCAAAAGCTCATATGGCACCA
TCCCAGCTCCATTTTTATTCCTCAACTTGGGATCTGCATTCCTTGCATCA
ATAATCCCTTCAAGCTCCATTAACTTGCCTCTAAACTTTTCAAATGCTGC
ATTTATAACCGGATCCTCACGCCATGCTGGCTCTATTTTTTTTCCTAAAT
ACTCCTCATCAGGAGAATGAGTCGATAAAACATCAAGAATAGCCATAACT
TTAGTAGCTTGAATCTGGGAAGGGAAGGTATTCAAAAGTGCATTTTCAGG
TTTTTCAAGGAAGAATTTCCATTGTTCATCAAATGGATCT
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