CX305607

Overview
NameCX305607
Unique NameCX305607
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length426
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14223 contig Ccv1_Contig14223:1..421. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305607 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.602e-19
Identity = 58/116 (50.00%), Postives = 78/116 (67.24%), Query Frame = 3
Query:  129 SVVAARVTGIR-KSGVYQFSSVK--YLPGTLQRNVSLSVRCMAKNEQQKDQ-----------STQPP-----KLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQ 419
            S+++  +T I  +S V QF+++   Y+P TL+RNVSL VR MA+ E ++             ST  P     + P++STKFSD+ AFSGPAPERINGRLAMIGFVAA+ VE++KGQ
Sbjct:    8 SIMSNSMTNISSRSRVNQFTNIPSVYIP-TLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQ 122          
BLAST of CX305607 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.389e-12
Identity = 38/80 (47.50%), Postives = 48/80 (60.00%), Query Frame = 3
Query:  180 FSSVKYLP-GTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKG 416
            F+    LP G+ +   +L  R +    Q +  +  PP  P+ ST   D  AFSGPAPERINGRLAM+GFV ALAVE  +G
Sbjct:   10 FAGAAVLPRGSARSLPALGRRTLVVRAQTEGPNAPPPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRG 89          
BLAST of CX305607 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.814e-12
Identity = 45/109 (41.28%), Postives = 58/109 (53.21%), Query Frame = 3
Query:   90 MAASLATQSMLGSSVVAARVTGIRKSGVYQFSSVKYLPGTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKG 416
            MA  ++  S  G++VV        +S    F + + LP       +L  R +    Q +  S  PP  P+ ST   D  AFSGPAPERINGRLAM+GFV ALAVE  +G
Sbjct:    1 MATMMSMSSFAGAAVVP-------RSSASSFGA-RSLP-------ALGRRALVVRAQTEGPSAPPPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRG 94          
The following BLAST results are available for this feature:
BLAST of CX305607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ELI_PEA7.602e-1950.00Early light-induced protein, chloroplastic OS=Pisu... [more]
ELI6_HORVU1.389e-1247.50Low molecular mass early light-inducible protein H... [more]
ELI9_HORVU1.814e-1241.28Low molecular mass early light-inducible protein H... [more]
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Properties
Property NameValue
Genbank descriptionC18007G08Rv Drought1 Citrus clementina cDNA clone C18007G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305607 ID=CX305607; Name=CX305607; organism=Citrus clementina; type=EST; length=426bp
GCGGGGATCATCAAAATTGCAAGTAAGGAGCCCATTAACCTAAAAACTCC
CAGTTGCTAAATTATTCCTCCGTTGCATAATCTACAAAAATGGCTGCTTC
ACTCGCCACTCAATCTATGCTTGGAAGCTCTGTCGTCGCAGCTCGTGTTA
CCGGCATCAGGAAATCTGGGGTGTACCAATTTTCCTCTGTTAAGTACTTA
CCTGGTACTCTGCAGAGAAATGTTAGCTTATCAGTGCGCTGCATGGCTAA
GAATGAGCAGCAGAAGGATCAATCAACTCAGCCACCAAAGCTACCGCGTA
TAAGCACGAAGTTCTCTGACGTGTTTGCGTTCAGCGGGCCGGCACCGGAG
AGGATAAACGGGAGGCTTGCGATGATTGGGTTCGTGGCTGCATTGGCGGT
GGAGCTATCCAAGGGTCAGGATGTGT
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