CX305608

Overview
NameCX305608
Unique NameCX305608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length348
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15504 contig Ccv1_Contig15504:62..409. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX305608 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.432e-23
Identity = 54/106 (50.94%), Postives = 71/106 (66.98%), Query Frame = -3 
Query:   26 KTAQIGSSLLVPCVQELVKNPALV-VPDRYIRPDQDSPLISDDTLIS-QIPVIDMQXXXXXXXXXXXLAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNL 337
            K A   SS+LVP VQE+VK   +  VP RY+R DQD   + DD  +  +IP+IDM+           + KLDFACKEWGFFQLVNHG+ ++FL+K+K E++ FFNL
Sbjct:    4 KGAAQWSSILVPSVQEMVKEKTITTVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNL 109
[Close]
BLAST of CX305608 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.756e-12
Identity = 41/102 (40.20%), Postives = 57/102 (55.88%), Query Frame = -3 
Query:   26 IGSSLLVPCVQELVKNPALVVPDRYIRPD--QDSPLISDDTLISQIPVIDMQXXXXXXXXXXXLAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNL 325
            +G SL V  VQ L       +P+RY+RP+   D  +  D++L  +IPVID+            LAK   AC +WGFFQL+NHG+    +EK+K + E FF L
Sbjct:    8 VGGSLPVENVQVLAGKELKNLPNRYVRPELEHDDVVPIDNSL--EIPVIDLSRLLDQQYACDELAKFHSACLDWGFFQLINHGVREEVIEKMKVDTEDFFRL 107
The following BLAST results are available for this feature:
BLAST of CX305608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SRG1_ARATH6.432e-2350.94Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
NCS1_COPJA1.756e-1240.20S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
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Properties
Property NameValue
Genbank descriptionC18007G09Rv Drought1 Citrus clementina cDNA clone C18007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305608 ID=CX305608; Name=CX305608; organism=Citrus clementina; type=EST; length=348bp
TTTTTTTTTTTTTTTTTTTTTTGCTGAGATTGAAGAATCCCTCAACCTCT
TTCTTTAATTTCTCTAGAAATGCTGTGCTCATTCCATGATTTACCAGCTG
GAAAAAACCCCATTCTTTGCATGCGAAGTCGAGCTTGGCTAGCTCAGAAT
CCATTGATTCTTCAGAAAGTAAGCTTTGCATGTCAATAACTGGTATCTGT
GAAATCAAAGTATCATCAGAAATGAGTGGTGAATCTTGATCTGGACGTAT
GTATCTGTCGGGGACAACTAACGCAGGATTCTTGACCAACTCTTGAACAC
AAGGCACAAGGAGAGAACTTCCAATCTGGGCCGTCTTTTGTTTCCCCG
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